PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678346551
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 185aa    MW: 20280.1 Da    PI: 8.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678346551genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000113961123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C  C + F++   L  H+++H
  678346551 39 YTCAFCRREFRSAQALGGHMNVH 61
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.94E-63666No hitNo description
PROSITE profilePS5015711.0113966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MIRKSKRSGC EDDDSWQVRA FQEDAAANIL GCTWPPRSYT CAFCRREFRS AQALGGHMNV  60
HRRDRARLHE LLPAPKAGEF AAAATGLRNL NPYHLPNPSS ILIPNPHMGA FSSLLPITPS  120
ILVPDPHLGF LPIPPGLHKS YPDPPHSGEA SDSPYSGCGI DHGYPPFGKV DLELRLGQRR  180
PPPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A4e-133461229superman protein
2l1o_A4e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678346551
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021679968.15e-37uncharacterized protein LOC110664555
TrEMBLA0A1R3KVN05e-36A0A1R3KVN0_COCAP; Zinc finger, C2H2-like protein
TrEMBLA0A2G9GHU82e-36A0A2G9GHU8_9LAMI; Uncharacterized protein
STRINGEMJ114496e-36(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.13e-30C2H2 family protein