PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678347340

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

NF-YC

Protein Properties

Length: 215aa MW: 23874.9 Da PI: 4.5457

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678347340	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	171.9	6.9e-54	30	133	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivp 97 ql++fw++q iek++dfknh+lPlarikki+kadedv+misaeaP+l+ kacelfilelt+rswlhaee+krrtl+ksdi aa+trtdifdflvd vp 678347340 30 QLQVFWAYQrqeIEKVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFEKACELFILELTIRSWLHAEEKKRRTLQKSDIVAAITRTDIFDFLVDLVP 129 89**9998899************************************************************************************* PP NF-YC 98 rdel 101 rde+ 678347340 130 RDEI 133 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.86E-32	27	124	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	1.0E-34	44	116	IPR009072	Histone-fold
Pfam	PF00808	1.5E-19	52	115	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MENNPQPQSA AAAAYPPPYQ HLLQQQQQQQ LQVFWAYQRQ EIEKVNDFKN HQLPLARIKK 60 IMKADEDVRM ISAEAPILFE KACELFILEL TIRSWLHAEE KKRRTLQKSD IVAAITRTDI 120 FDFLVDLVPR DEINDDVGGI LSPQGDSAGV TGIPYYYPPM GQPAMGQPAF DPTVYAQAGA 180 PVPPQPWQTV WQTAPADDSY AGGGDPASTG GKLEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	3e-51	38	130	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	102	108	RRTLQKS

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269\|PubMed:17322342}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678347340

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022852290.1	2e-92	nuclear transcription factor Y subunit C-1-like isoform X1
Refseq	XP_022852291.1	2e-92	nuclear transcription factor Y subunit C-1-like isoform X2
Swissprot	Q9FMV5	5e-81	NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBL	S8CYK1	2e-91	S8CYK1_9LAMI; Uncharacterized protein
STRING	Migut.D01269.1.p	1e-89	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4087	21	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63470.2	7e-78	nuclear factor Y, subunit C4

Publications ? help Back to Top
Hwang YH, et al. Functional conservation of rice OsNF-YB/YC and Arabidopsis AtNF-YB/YC proteins in the regulation of flowering time. Plant Cell Rep., 2016. 35(4): p. 857-65 [PMID:26754793] Liu X, et al. The NF-YC-RGL2 module integrates GA and ABA signalling to regulate seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 12768 [PMID:27624486] Myers ZA, et al. NUCLEAR FACTOR Y, Subunit C (NF-YC) Transcription Factors Are Positive Regulators of Photomorphogenesis in Arabidopsis thaliana. PLoS Genet., 2016. 12(9): p. e1006333 [PMID:27685091] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Qi M, et al. QQS orphan gene and its interactor NF-YC4 reduce susceptibility to pathogens and pests. Plant Biotechnol. J., 2019. 17(1): p. 252-263 [PMID:29878511]