PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678348103
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 193aa    MW: 21857.6 Da    PI: 7.7663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678348103genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd +l ++++ +G g W+  ar  g++Rt+k+c++rw++yl
        678348103 16 KGPWTMEEDMILMNYIAHHGEGVWNNLARAAGLKRTGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding53.94.3e-1769112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l+ ++++++G++ W++Ia++++ gRt++++k++w++
        678348103  69 RGNITPEEQHLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 112
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5381163IPR017930Myb domain
SuperFamilySSF466899.73E-3114110IPR009057Homeodomain-like
SMARTSM007175.9E-121565IPR001005SANT/Myb domain
PfamPF002498.4E-151663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-221770IPR009057Homeodomain-like
CDDcd001671.19E-91863No hitNo description
PROSITE profilePS5129424.94264118IPR017930Myb domain
SMARTSM007175.0E-1468116IPR001005SANT/Myb domain
PfamPF002493.0E-1669112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2571119IPR009057Homeodomain-like
CDDcd001672.11E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MESKSTNKSG DVEVRKGPWT MEEDMILMNY IAHHGEGVWN NLARAAGLKR TGKSCRLRWL  60
NYLRPDVRRG NITPEEQHLI MELHAKWGNR WSKIAKHLPG RTDNEIKNFW RTRIQKHMKQ  120
AELTGAALNN QASTSTLSGG APAELPILET YSPTSYTGSV GAAFPEGQFP IDSSEEQLWS  180
MDDFWSMNLL NGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251311624126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678348103
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017258853.13e-94PREDICTED: myb-related protein 305-like
SwissprotP813914e-90MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A075BMS11e-94A0A075BMS1_SALMI; MYB-related transcription factor
STRINGXP_009618404.11e-91(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-84myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]