PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678348308
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family TCP
Protein Properties Length: 257aa    MW: 28572.8 Da    PI: 8.1281
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678348308genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.11.4e-29441523103
        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........kaaksa 94 
                g+kdrhsk++T +g+RdRR+Rls+++a++++ Lqd+LG+ ++sk ++WLl + k++i++l+ ++  +++++  +s   +as+ s +        ++++++
  678348308  44 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYSLQDRLGLGQPSKVVDWLLDATKHEIDKLPPLPLLPETFTAYHSAAAAASELSTHfltsygvkEKENEE 143
                78*************************************************************5555544422222222222222222333444222222 PP

        TCP  95 akskksqks 103
                  +  +q+s
  678348308 144 GFGMLQQQS 152
                222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.10745103IPR017887Transcription factor TCP subgroup
PfamPF036341.7E-2745151IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MMMNQAKNEE DSVSEQGKLP CSSSSRQWSS YKNPRIVRVS RTFGGKDRHS KVCTVRGLRD  60
RRIRLSVPTA IQLYSLQDRL GLGQPSKVVD WLLDATKHEI DKLPPLPLLP ETFTAYHSAA  120
AAASELSTHF LTSYGVKEKE NEEGFGMLQQ QSNNSTSTSL IPITNFQNPY LHWDLQNGAH  180
FGFNETQNPN QTSLYFCSSE VTSATATPTP SFLLSSSQLS DSGLGGQNHQ SVSPTTLHFL  240
RQLNDAQAAR PDHHRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1850104155Putative transcription factor PCF6
5zkt_B4e-1850104155Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678348308
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087359.19e-60transcription factor TCP5
TrEMBLA0A2G9H5242e-54A0A2G9H524_9LAMI; Uncharacterized protein
STRINGXP_009795262.18e-54(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.15e-41TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5