PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678349855

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

FAR1

Protein Properties

Length: 771aa MW: 88320.7 Da PI: 7.8752

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678349855	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.8	1.1e-20	56	131	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA+evGF++r+ + ++s+ +g++++r+fvCskeg++++ +rtgC a ++v+k ++gkw+++++++eHnH++ 678349855 56 EFYSVYATEVGFKIRIGQLYRSRVDGSVISRRFVCSKEGFQTN--------------SRTGCPAFIRVQKVETGKWVLANIKNEHNHDFE 131 6*************************************987..............589*************************986 PP
2	FAR1	63.3	6.8e-20	206	280	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY++YA +GF++r+ + +sk++g+it+r+fvCskeg+++++ r gC a ++++++++gkw+v++le+ HnHe+ 678349855 206 KFYHTYAAGIGFRIRIGQLFRSKHDGSITSRRFVCSKEGHQHPS--------------RNGCGAYMRIQRQESGKWVVDRLEKGHNHEF 280 6*************************************9995..............557************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-16	56	131	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	2.0E-15	206	280	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-25	380	471	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.373	657	693	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.7E-7	663	690	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.7E-8	668	695	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 771 aa Download sequence Send to blast
MHADPDMNRE VAGSFRKKAA EAVSVSKSNG YPDDDPQSRM EPHVGLEFDS AEEAQEFYSV 60 YATEVGFKIR IGQLYRSRVD GSVISRRFVC SKEGFQTNSR TGCPAFIRVQ KVETGKWVLA 120 NIKNEHNHDF EPSGEVCPPR VQRKSFGTPR SSAGGASRTG IRSHEDDNAS DIENKRPKKE 180 DIDGLSVVRG EPYKGLEFST ANEAYKFYHT YAAGIGFRIR IGQLFRSKHD GSITSRRFVC 240 SKEGHQHPSR NGCGAYMRIQ RQESGKWVVD RLEKGHNHEF EAAVDPSRTV ASKPQKEEGS 300 SAVENLDLVE TNGALSLVKR VIESNIGVDW YDVLLNYFQS RQVEDMGFFY AVELRDGKGM 360 NVFWADSRCR FSCSQFGDAI VFDTSYRRGS YSVPLASFLG VNHHRKPVLL GCALVADESE 420 ESFTWIFQAW AKAMSCCRPV SIIADQDVVI QNSISQVFPG THHRFSSWQI LVKEQENFGQ 480 LFSMNPEFKY EYDACVFQSQ TPSEFDSSWN MLMNKYNLRE NSWFKEMYRM RKSWVPLHVR 540 GTFFAGIPIG GSLKPFFGTI LTPQTPLNEF IIRYEKALEQ HREEERKEDF NSFNLQAVLH 600 TKDPIEEQCR RLYTMTMFKV FQKELLECYS YAGIKINVEG AISRYLVQKC GNGDERNTVA 660 FNASNLNISC SCKMFEFEGI LCRHTLKVFQ IMNIRELPSR YILHRWSKNA KYGILRDVDS 720 AGGLQDFKAL MLWSLREEAR NYIEAGATSL ERYKLAFDIM QEGRRNLCWQ S

Sequence ? help Back to Top

Protein Sequence Length: 771 aa Download sequence Send to blast

MHADPDMNRE VAGSFRKKAA EAVSVSKSNG YPDDDPQSRM EPHVGLEFDS AEEAQEFYSV  60
YATEVGFKIR IGQLYRSRVD GSVISRRFVC SKEGFQTNSR TGCPAFIRVQ KVETGKWVLA  120
NIKNEHNHDF EPSGEVCPPR VQRKSFGTPR SSAGGASRTG IRSHEDDNAS DIENKRPKKE  180
DIDGLSVVRG EPYKGLEFST ANEAYKFYHT YAAGIGFRIR IGQLFRSKHD GSITSRRFVC  240
SKEGHQHPSR NGCGAYMRIQ RQESGKWVVD RLEKGHNHEF EAAVDPSRTV ASKPQKEEGS  300
SAVENLDLVE TNGALSLVKR VIESNIGVDW YDVLLNYFQS RQVEDMGFFY AVELRDGKGM  360
NVFWADSRCR FSCSQFGDAI VFDTSYRRGS YSVPLASFLG VNHHRKPVLL GCALVADESE  420
ESFTWIFQAW AKAMSCCRPV SIIADQDVVI QNSISQVFPG THHRFSSWQI LVKEQENFGQ  480
LFSMNPEFKY EYDACVFQSQ TPSEFDSSWN MLMNKYNLRE NSWFKEMYRM RKSWVPLHVR  540
GTFFAGIPIG GSLKPFFGTI LTPQTPLNEF IIRYEKALEQ HREEERKEDF NSFNLQAVLH  600
TKDPIEEQCR RLYTMTMFKV FQKELLECYS YAGIKINVEG AISRYLVQKC GNGDERNTVA  660
FNASNLNISC SCKMFEFEGI LCRHTLKVFQ IMNIRELPSR YILHRWSKNA KYGILRDVDS  720
AGGLQDFKAL MLWSLREEAR NYIEAGATSL ERYKLAFDIM QEGRRNLCWQ S

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678349855

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011090829.1	0.0	protein FAR1-RELATED SEQUENCE 7-like isoform X1
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A2G9HD95	0.0	A0A2G9HD95_9LAMI; Uncharacterized protein
STRING	Migut.N00138.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7347	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]