PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678350484
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ERF
Protein Properties Length: 171aa    MW: 19372.3 Da    PI: 4.6451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678350484genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-171666256
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               +ykGVr +k +g++v eIr     + r r++lg+++tae+Aa+a +aa ++l+g+
  678350484 16 KYKGVRKRK-WGKYVTEIRLS---NSRERIWLGSYDTAEKAARAFDAALLCLRGP 66
               8*****999.**********4...225*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.92E-261675No hitNo description
SuperFamilySSF541712.16E-191674IPR016177DNA-binding domain
SMARTSM003802.8E-291679IPR001471AP2/ERF domain
PROSITE profilePS5103220.4421673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-281674IPR001471AP2/ERF domain
PfamPF008475.4E-111665IPR001471AP2/ERF domain
PRINTSPR003671.4E-91728IPR001471AP2/ERF domain
PRINTSPR003671.4E-93955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSSGEESSPA AEEQVKYKGV RKRKWGKYVT EIRLSNSRER IWLGSYDTAE KAARAFDAAL  60
LCLRGPHAKF NFPDDPPSFA AAPGMSPAEI QSMAQQYANR FPTHRAEEEE EKAENSKETM  120
DWSFLGDFDL GKRSGISGIS DFELFHDPEG MNTPTYFGLP HYRNYDDTDD E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1613751174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11723KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678350484
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022856083.11e-53ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC24e-38ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA0A2G9H4V53e-50A0A2G9H4V5_9LAMI; Uncharacterized protein
STRINGMigut.A00330.1.p1e-49(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19392466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.13e-33ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]