PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678351137
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 189aa    MW: 20838.7 Da    PI: 8.4384
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678351137genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.42.8e-171054147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+ ++eE++l+v+++++lG++ W++Ia +++ gRt++++k++w+++
        678351137 10 RGNISEEEEDLIVRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 54
                     7899******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-23158IPR009057Homeodomain-like
SuperFamilySSF466891.12E-13157IPR009057Homeodomain-like
PROSITE profilePS5129424.791559IPR017930Myb domain
SMARTSM007171.3E-15957IPR001005SANT/Myb domain
PfamPF002491.7E-151054IPR001005SANT/Myb domain
CDDcd001679.78E-131455No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNYLRPGIKR GNISEEEEDL IVRLHRLLGN RWSLIAGRLP GRTDNEIKNY WNTHILKKRK  60
EPTSPPPPPS VTTKSKKNKR KKAGVEEEEE PPKIKVYAPK AIRVTAKFFN ADAGCDALGS  120
GPSSSSDAGD PAAPAAVGSE PSFSWSPLLD ITDLPFDNEL FDTLPGIYPL EPSPWPAATW  180
AWPPFSVPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1325851107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678351137
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.16e-42transcription repressor MYB5-like
TrEMBLA0A0E3GM287e-42A0A0E3GM28_9LAMI; MYB13 (Fragment)
STRINGPGSC0003DMT4000316072e-38(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-29myb domain protein 5