PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678351197
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 205aa    MW: 22583.6 Da    PI: 8.114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678351197genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.58.9e-0788115431
                HHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkas 31 
                +h+ +Er RR++i +++  L++l+P + 
  678351197  88 SHSLAERVRREKISERMKLLQSLVPGCH 115
                8************************874 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-882116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.45E-582122No hitNo description
PROSITE profilePS508889.84584136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-887116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MAAASSSFQV HPHRQCPSHL PNSETLQPNT PLLPTAESPL KPAKKRRVSK KPASPSASHS  60
GKSARKDGEE AEKGYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQSL VPGCHKLLSM  120
KLASVNPLPF DFGVDMESFM MRPDQQELNF SMENNASGYQ GTFPISTPLQ QMLAADILPP  180
GSSQSLWEEG DDEELKAAAS DCIFF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14965KKPASPSASHSGKSARK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678351197
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311839.13e-35transcription factor bHLH137-like
RefseqXP_015068092.12e-35transcription factor bHLH137
SwissprotQ93W886e-28BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A2R6QG748e-37A0A2R6QG74_ACTCH; Transcription factor bHLH137 like
STRINGSolyc03g097820.1.11e-34(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-29bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]