PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678352131
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C2H2
Protein Properties Length: 470aa    MW: 51432.3 Da    PI: 8.6021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678352131genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.5e-054668123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               + C+ C+k F r  nL+ H r H
  678352131 46 FICEVCSKGFQREQNLQLHRRGH 68
               89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-54568IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-84568No hitNo description
PROSITE profilePS5015710.9284668IPR007087Zinc finger, C2H2
SMARTSM003550.0114668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
SMARTSM0035516088118IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-5111144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.54E-8118143No hitNo description
SMARTSM00355100123143IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MRLLPLCGRH QEHKKSIFFE IADFTENPDA EVIALSPKTL MATNRFICEV CSKGFQREQN  60
LQLHRRGHNL PWKLKQKTAK DVVRKKVYLC PDPTCAHHDP SRALGDLTGI KKHFSRKHGE  120
KKYKCDKCSK KYAVVSDWKA HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALVQEIDG  180
GSILNHAPLG GHLLTGFPRN SAAAHDQIDV GLLFANHELL RYGSGPSVCQ LSSLVAPAGP  240
PFFPPPLSLQ QQPYSSNEEC QLLNKPSFHS LMQQQQLPLE NGGGSSLGLV NLSFFPGNSN  300
SSPQHSAIFS SGHQHRHLTS MMMTIPSFYS GSTALQSPGA DHTSSASIYG SAATTSPFKP  360
MPPSFGVFEG NNNHLQDVVN SVTGGGGGSS SSLFDPGPFV GKPALETINS DKGVFVSHGL  420
DMEMEQGRLK LTRDFMGVGE ILGEQHRSRI SMDRLSSASE LSSLTWKPAP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-32119177361Zinc finger protein JACKDAW
5b3h_F3e-32119177361Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17285KLKQKTAKDVVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap678352131
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547771.11e-128protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A4D8YP471e-124A0A4D8YP47_SALSN; Uncharacterized protein
STRINGMigut.E00578.1.p1e-113(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.13e-87indeterminate(ID)-domain 4