PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678353272

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

FAR1

Protein Properties

Length: 760aa MW: 86741.2 Da PI: 7.4047

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678353272	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.6	1.4e-25	30	116	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++Y++YAk+vGF + k +s++s+ ++e+++++f C ++g+r++++++ ++r++ ++gCka+++vk++ +gkw+++++++eHnH+l p 678353272 30 EYYRHYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNRQQSDDA----INPRPSPKIGCKASMHVKRKPSGKWYIHTFVKEHNHDLLP 116 69**************************************99888....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-23	30	116	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-22	230	321	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.249	510	546	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-9	516	544	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.5E-6	521	548	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 760 aa Download sequence Send to blast
MESGSRDEVN STNLEPTHDV EFDSHEAAYE YYRHYAKSVG FGTAKLSSRR SRASKEFIDA 60 KFSCIRYGNR QQSDDAINPR PSPKIGCKAS MHVKRKPSGK WYIHTFVKEH NHDLLPAQVH 120 FFRSHKSTDT SNSDFKTRKK KVVSGGLNQF GIYQFPSSSI ENVIRNQHDK GRFLNLEDGD 180 AQVVLEFCEH MHHENPNFVY AIDLNEGHRL RNIFWVDAKG LEDYAYFGDV VSFDTTYFVN 240 KYRVPLVIFV GVNHHMQPTL FGCALIADLT LHTFVWLMQS WYFAMGGRSP KVLLSDQNET 300 IKAAVQFVLP ETHHFFHLWS VLEKIPRRVD YLSVWLETIV KKLDKCIYRS WNEEQFDKRW 360 WKLIERCNLQ EDECMQSLYE DRKLWVPALM TNISFAGLSV ASRSESLNSL FDRYIHGETS 420 LMEFLGRYKS IIGDRYEEES KANFDAWHET PELKSPSPFE KQMQFIYTPE IFSKFQIEVL 480 GAAACHLKKE KEDGSIVLYV VKDFENNLDF MVKWDERGSD IHCSCCSFQY KGYLCRHAIV 540 VLQMSGVFSV PFKFVLQRWT NVATSKAPLS ERLEDVQAKV RRYNDLCRRA IILGEEGSLS 600 HESYNTACNA IHEALAQCSN KNKNCNNDPR LNLPTPPATQ VSPGLEHVNV FSSQQHPIVT 660 GATNAGGASK RANSDKEPGD CGGSGVSNKK GKSIIQVPID PQIASIGTQG IFQHMSQDTT 720 SQMDYAAAAL CPTRLLTTLL RGGELSKRGV EMLGQMLEHQ

Sequence ? help Back to Top

Protein Sequence Length: 760 aa Download sequence Send to blast

MESGSRDEVN STNLEPTHDV EFDSHEAAYE YYRHYAKSVG FGTAKLSSRR SRASKEFIDA  60
KFSCIRYGNR QQSDDAINPR PSPKIGCKAS MHVKRKPSGK WYIHTFVKEH NHDLLPAQVH  120
FFRSHKSTDT SNSDFKTRKK KVVSGGLNQF GIYQFPSSSI ENVIRNQHDK GRFLNLEDGD  180
AQVVLEFCEH MHHENPNFVY AIDLNEGHRL RNIFWVDAKG LEDYAYFGDV VSFDTTYFVN  240
KYRVPLVIFV GVNHHMQPTL FGCALIADLT LHTFVWLMQS WYFAMGGRSP KVLLSDQNET  300
IKAAVQFVLP ETHHFFHLWS VLEKIPRRVD YLSVWLETIV KKLDKCIYRS WNEEQFDKRW  360
WKLIERCNLQ EDECMQSLYE DRKLWVPALM TNISFAGLSV ASRSESLNSL FDRYIHGETS  420
LMEFLGRYKS IIGDRYEEES KANFDAWHET PELKSPSPFE KQMQFIYTPE IFSKFQIEVL  480
GAAACHLKKE KEDGSIVLYV VKDFENNLDF MVKWDERGSD IHCSCCSFQY KGYLCRHAIV  540
VLQMSGVFSV PFKFVLQRWT NVATSKAPLS ERLEDVQAKV RRYNDLCRRA IILGEEGSLS  600
HESYNTACNA IHEALAQCSN KNKNCNNDPR LNLPTPPATQ VSPGLEHVNV FSSQQHPIVT  660
GATNAGGASK RANSDKEPGD CGGSGVSNKK GKSIIQVPID PQIASIGTQG IFQHMSQDTT  720
SQMDYAAAAL CPTRLLTTLL RGGELSKRGV EMLGQMLEHQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678353272

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011072522.1	0.0	protein FAR1-RELATED SEQUENCE 4
Refseq	XP_011072523.1	0.0	protein FAR1-RELATED SEQUENCE 4
Swissprot	Q6NQJ7	0.0	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	A0A2G9GHM0	0.0	A0A2G9GHM0_9LAMI; Uncharacterized protein
STRING	Migut.I01028.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	0.0	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]