PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678354094

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 99aa MW: 11348.3 Da PI: 10.2677

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678354094	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	102.4	1.6e-32	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s 678354094 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.3E-41	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.515	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.61E-44	2	76	No hit	No description
SuperFamily	SSF55455	1.7E-34	2	76	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-33	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.7E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS 60 SSMLKTLERY QKSNYGAPET NVSTREALVL MKCLYVVHA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	4e-22	1	88	1	88	MEF2C
5f28_B	4e-22	1	88	1	88	MEF2C
5f28_C	4e-22	1	88	1	88	MEF2C
5f28_D	4e-22	1	88	1	88	MEF2C
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678354094

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ398009	3e-74	GQ398009.1 Fragaria chiloensis transcription factor MADS-box 1-like mRNA, complete sequence.
GenBank	GQ398010	3e-74	GQ398010.1 Fragaria chiloensis transcription factor MADS-box 2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007158666.1	3e-57	hypothetical protein PHAVU_002G1723001g, partial
Refseq	XP_015958020.1	4e-57	MADS-box transcription factor 1 isoform X1
Refseq	XP_016191072.1	4e-57	MADS-box transcription factor 1 isoform X1
Refseq	XP_025640164.1	4e-57	MADS-box transcription factor 1 isoform X1
Refseq	XP_025691704.1	4e-57	MADS-box transcription factor 1 isoform X1
Swissprot	Q8LLR0	2e-57	MADS4_VITVI; Agamous-like MADS-box protein MADS4
TrEMBL	A0A445DLD0	1e-55	A0A445DLD0_ARAHY; Uncharacterized protein
TrEMBL	V7CN54	6e-56	V7CN54_PHAVU; Uncharacterized protein (Fragment)
STRING	VIT_01s0010g03900.t01	6e-56	(Vitis vinifera)
STRING	evm.model.supercontig_43.78	8e-56	(Carica papaya)
STRING	XP_007158666.1	1e-56	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA40	24	625

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24260.3	4e-57	MIKC_MADS family protein

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]