PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354322
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NAC
Protein Properties Length: 237aa    MW: 27061.5 Da    PI: 9.691
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354322genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.93.6e-48121361128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrFhPtdeelvv+yLk+kv + +l+  +vi+e+++++ +Pwd+p +    e+e yfF++r+ ky++g+r+nr+t+sgyWkatg dk+v+s+ ++++
  678354322  12 LPPGFRFHPTDEELVVQYLKRKVFSYPLPS-TVISEFEVCREDPWDFPGN---WEHERYFFTTREVKYSKGNRSNRSTASGYWKATGLDKQVVSTrSNHV 107
                79**************************99.89***************43...56799**********************************99867778 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kktLvfy+g+ +kg ktdW+mheyrl
  678354322 108 VGMKKTLVFYRGKPRKGCKTDWIMHEYRL 136
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.93E-565155IPR003441NAC domain
PROSITE profilePS5100554.93912155IPR003441NAC domain
PfamPF023652.2E-2713136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MERMMKNGVM RLPPGFRFHP TDEELVVQYL KRKVFSYPLP STVISEFEVC REDPWDFPGN  60
WEHERYFFTT REVKYSKGNR SNRSTASGYW KATGLDKQVV STRSNHVVGM KKTLVFYRGK  120
PRKGCKTDWI MHEYRLQNPQ SSAKVNWVLC RVFLKKKGSR NGNDERFPTQ TPAAESPVFY  180
DFMAKDVNVR PANSSSGSSD VTAISPRNEA VDHGDDSSSC CNSFIACAGS NQRPSCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-451016018173NAC domain-containing protein 19
3swm_B2e-451016018173NAC domain-containing protein 19
3swm_C2e-451016018173NAC domain-containing protein 19
3swm_D2e-451016018173NAC domain-containing protein 19
3swp_A2e-451016018173NAC domain-containing protein 19
3swp_B2e-451016018173NAC domain-containing protein 19
3swp_C2e-451016018173NAC domain-containing protein 19
3swp_D2e-451016018173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354322
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011086848.11e-110NAC domain-containing protein 83
SwissprotQ9FY938e-85NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A2G9H1C11e-102A0A2G9H1C1_9LAMI; Uncharacterized protein
STRINGPOPTR_0001s13380.12e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13872377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-87NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]