PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678354354

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

G2-like

Protein Properties

Length: 344aa MW: 38538.2 Da PI: 7.4816

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678354354	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	72	8.7e-23	73	124	1	54
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 k+r +W pe H+ F+eav++L Gs +A P +il+lmk++gLt++hv+SHLQkYR 678354354 73 KQRFVWHPEYHQMFLEAVQRL-GS-NASPMRILKLMKIEGLTRDHVASHLQKYR 124 79*****************.54.6************************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-22	70	129	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.956	70	128	IPR017930	Myb domain
SuperFamily	SSF46689	2.07E-15	72	129	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.7E-21	73	126	IPR006447	Myb domain, plants
Pfam	PF00249	9.7E-6	78	124	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MCRPTRTYVS GYMQSRNAMM LVEHTVTRNT ANPSQGNGNG NGSQPTNDTG RPGFDKGEQS 60 RSAKTRVDKK DKKQRFVWHP EYHQMFLEAV QRLGSNASPM RILKLMKIEG LTRDHVASHL 120 QKYRDQLKKQ QVSDKNTCPQ RETPNVSTNC PHASVNLNPT NLTFPTNSHH VVQDYFYNFS 180 SGTWPIYHAN PTPCICSSPP LWPAPITCFP DDHFSAGCNV PIKHEDSHVP HSHSLGFINS 240 HPPNPLSGSH LPVRDVVGNG VNPRGQTMQA MFEHHNLGRE YALAPLPLEQ GIQPMPQLTP 300 SQSDDLLSNL DESQLVAMYL QIEQLQRFQE TDLPPEQAPN GDAI

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MCRPTRTYVS GYMQSRNAMM LVEHTVTRNT ANPSQGNGNG NGSQPTNDTG RPGFDKGEQS  60
RSAKTRVDKK DKKQRFVWHP EYHQMFLEAV QRLGSNASPM RILKLMKIEG LTRDHVASHL  120
QKYRDQLKKQ QVSDKNTCPQ RETPNVSTNC PHASVNLNPT NLTFPTNSHH VVQDYFYNFS  180
SGTWPIYHAN PTPCICSSPP LWPAPITCFP DDHFSAGCNV PIKHEDSHVP HSHSLGFINS  240
HPPNPLSGSH LPVRDVVGNG VNPRGQTMQA MFEHHNLGRE YALAPLPLEQ GIQPMPQLTP  300
SQSDDLLSNL DESQLVAMYL QIEQLQRFQE TDLPPEQAPN GDAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678354354

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58080.1	1e-15	response regulator 18