PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354515
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 243aa    MW: 27375.3 Da    PI: 6.2865
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354515genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding414.5e-13107151347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ +++ + +++G+g+W+ I+r + ++Rt+ q+ s+ qky
        678354515 107 PWSEQEHRQFLLGLRKFGKGDWRNISRNFVTTRTPTQVASHAQKY 151
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.2882681IPR017884SANT domain
SMARTSM007176.2E-72779IPR001005SANT/Myb domain
PfamPF002492.1E-53076IPR001005SANT/Myb domain
CDDcd001676.22E-63077No hitNo description
SuperFamilySSF466898.97E-113084IPR009057Homeodomain-like
PROSITE profilePS5129416.795100156IPR017930Myb domain
SuperFamilySSF466892.47E-16101156IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-17104155IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.5E-11104150IPR009057Homeodomain-like
SMARTSM007171.9E-11104154IPR001005SANT/Myb domain
PfamPF002497.0E-11107151IPR001005SANT/Myb domain
CDDcd001677.15E-10107152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MNRDMEAASS CHSSLYWVLE GEEEEASAAR WSAEDNKKFE NALAYFDQDT PDRWHNVASM  60
VPGKTVDDVI KQYRDLVRDV RDIEDGRIPI PGYVNNGEVL GRRKGVPWSE QEHRQFLLGL  120
RKFGKGDWRN ISRNFVTTRT PTQVASHAQK YFIRQHSGDK DKKRSSIHDI TMAAIDDANS  180
SQKQTPDSGG AREAEAMGFI SPEAMAHFQL HSSEFGQMVV DADSFPHLGL HHPPPFPVNP  240
AGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-1931971177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354515
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094978.15e-78transcription factor DIVARICATA-like
SwissprotQ8S9H78e-65DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A4D9AMA03e-81A0A4D9AMA0_SALSN; Uncharacterized protein
STRINGSolyc09g014250.2.15e-77(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-71MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]