PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678354518
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family Trihelix
Protein Properties Length: 270aa    MW: 31925 Da    PI: 6.2195
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678354518genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.39.8e-2423106187
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                +W+ +e+++ +++r e++ ++ ++k++k lWe vs +m+e+g++r+p qCk+kw+nl +ry+ + ++ +++   +++++p++++lea
  678354518  23 QWSMKETREFLAIRAELDPTFMETKRNKILWEVVSTRMKEKGYSRNPDQCKCKWKNLVTRYRGCGAMGEEE---TRQHFPFYSDLEA 106
                7******************************************************************9985...45678****9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122033.93E-222286No hitNo description
PfamPF138371.3E-1923107No hitNo description
PROSITE profilePS500907.1662480IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MYRGEQYSQS ADVERSSGER LPQWSMKETR EFLAIRAELD PTFMETKRNK ILWEVVSTRM  60
KEKGYSRNPD QCKCKWKNLV TRYRGCGAMG EEETRQHFPF YSDLEAIFEA RMQRVMWLDD  120
AEGTKKPGAD RLSSENDESD AERGGGSSSA LRKKRKAKEK ANVGLNSSER ESSSGWLINS  180
VKEIMEDFLK QQMEMEMQMM NAYDAREEER RAKEMEWRLR MEALENERVM IMKRWRQKED  240
ELRAREEARN EKRDALISAL LDKLQRDDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A4e-121984267DNA binding protein GT-1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap678354518
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095020.12e-90trihelix transcription factor GT-3b
RefseqXP_020553261.12e-90trihelix transcription factor GT-3b
TrEMBLA0A2Z7B1Q61e-97A0A2Z7B1Q6_9LAMI; Trihelix transcription factor GT-3b
STRINGMigut.J00154.1.p4e-88(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.11e-50Trihelix family protein