PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355018
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CO-like
Protein Properties Length: 338aa    MW: 37544.8 Da    PI: 8.0724
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355018genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.94.9e-091255340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C+ + + +++++C  ++ +lC++C ++ H+       H++v
  678355018 12 ARACDYCIKVRARWYCAADDAFLCQSCDSSVHSAnpvarrHQRV 55
               578******99*********************667888888876 PP
2CCT66.66.8e-23290333144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrF k++
  678355018 290 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFIKRS 333
                9****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.7E-101057IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3671057IPR000315B-box-type zinc finger
PfamPF006431.0E-61355IPR000315B-box-type zinc finger
CDDcd000213.14E-91357No hitNo description
PfamPF062036.8E-18290332IPR010402CCT domain
PROSITE profilePS5101715.983290332IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGASSVVGGK AARACDYCIK VRARWYCAAD DAFLCQSCDS SVHSANPVAR RHQRVRLKTA  60
SIKHSLGAVS VPRWHRGLCR RVRTPRQKKI ASEEATRVPE DSGGKESPVK NEAQLLYQVP  120
NFDDEETMAD SSLQVLTDFF HSDVDLDNFS ADVESLLGKG HENETFNMSE LGLLECESVV  180
KVENEAIAGN CSDHQPQANS ELNSEFDSPI SGDGDNSNEH HDSSKVFLKL NYDIVLSSWG  240
SKKSPWTTGE RPDSNSTHCW LPESTGCCGT MHSHGATGTV TGNAGDDGGR EARVSRYREK  300
RRTRLFSKKI RYEVRKLNAE KRPRMKGRFI KRSNPPLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300316RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355018
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.21e-120zinc finger protein CONSTANS-LIKE 16
SwissprotQ8RWD02e-81COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2G9HYH31e-112A0A2G9HYH3_9LAMI; Uncharacterized protein
STRINGMigut.L01064.1.p1e-103(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.17e-84B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]