PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355027
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB_related
Protein Properties Length: 151aa    MW: 16789.8 Da    PI: 8.4775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355027genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.9e-083980444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WTt E + + da + +  +   +W+ +ar +g  Rt++++k ++
        678355027 39 WTTAENKEFEDALAVYDEDtphRWANVARAVG--RTEEEVKRHY 80
                     *******************************8..*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-63586IPR001005SANT/Myb domain
SuperFamilySSF466891.6E-113891IPR009057Homeodomain-like
PROSITE profilePS500906.2723984IPR017877Myb-like domain
CDDcd001672.67E-63980No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MGRGVHSIKT RRSFTYSVSS IKAPPGPMAS FSMAHCRGWT TAENKEFEDA LAVYDEDTPH  60
RWANVARAVG RTEEEVKRHY EILVEDITHI ESGGVPFPQY LNLPEPPLSN STQLTTSMLF  120
TQTHVASETS ARKWAPANYR RSAPPAGKSS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-2933100173RADIALIS
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-28RAD-like 6