PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355062
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26061.4 Da    PI: 5.7115
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355062genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.76.2e-232775149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+i+n+snrqvtfskRr g++KKA+EL++L +ae+a+i+ s+  ++y +
  678355062 27 KKIDNTSNRQVTFSKRRSGLFKKASELCILSGAEIAIIVHSTGKRVYSF 75
               68******************************************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.6931979IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-301978IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-262090IPR002100Transcription factor, MADS-box
CDDcd002651.19E-342094No hitNo description
PRINTSPR004045.6E-202141IPR002100Transcription factor, MADS-box
PfamPF003197.5E-222875IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-204156IPR002100Transcription factor, MADS-box
PRINTSPR004045.6E-205677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MGSKALTMMQ GTAGKKMTQG RKKIEIKKID NTSNRQVTFS KRRSGLFKKA SELCILSGAE  60
IAIIVHSTGK RVYSFGHPTP DAIVDRFLNG GDAWETNAAP AAKARDYNRH YSEVCEELEM  120
EKKRKQAIEE EKRAEAHGIG GSGGNFWWND VVVDGLELDE LEQYAAAMEE LVKNVSLRAD  180
DLMLAQSSSK SFPALAPPEL HDFGPVVPVD QTAELPWNCF YDPSFGSTGG SELLFTG
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355062
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835329.12e-79PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G9HQQ62e-80A0A2G9HQQ6_9LAMI; Uncharacterized protein
STRINGMigut.N01120.1.p7e-79(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-39AGAMOUS-like 62