PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355236
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family C3H
Protein Properties Length: 335aa    MW: 36494.3 Da    PI: 6.7727
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355236genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.29.1e-1195119126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                ykt+lC+ f++ GtC+y  +C+FaH+
  678355236  95 YKTKLCCKFRA-GTCPYVTNCNFAHS 119
                9**********.*************8 PP
2zf-CCCH18.24.4e-06168188626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+ f+    C+yGd+C+F H+
  678355236 168 CKKFYTDEGCPYGDTCTFLHD 188
                99999999************7 PP
3zf-CCCH42.41.1e-13223248126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C++G++C+FaHg
  678355236 223 WKTRICNKWELTGYCPFGSKCHFAHG 248
                8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-891125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-1592127IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-494120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.26394121IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-895119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-8160190IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-6160190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.249162190IPR000571Zinc finger, CCCH-type
SMARTSM003562.1162189IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-17217253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-10219253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.544222250IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-9222249IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11223248IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDYRQENGFS VGNVVQVLGE NSTENWGAIP ATRVPESDKD YVMWNADSSI NSNLTPNHEE  60
RSRSGSEPPN KRSRNSVSGD LIASNRAKAI GKMFYKTKLC CKFRAGTCPY VTNCNFAHSV  120
EELRKPPPNW QEIVAAHEEE RTEPREEFQI PILGVTDEPH RSHKGRHCKK FYTDEGCPYG  180
DTCTFLHDEQ SRARESVAIS LGPGSGAGYG TGGSESTLKP SNWKTRICNK WELTGYCPFG  240
SKCHFAHGSA ELNRSGGGPS DPDFTDATAS ADAKQGSAAP INSVASSAAS VPDLDGYRIG  300
AASQPVMPKT GLPTAQKWNG PNKISKIYGD WIDDL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355236
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092357.11e-163zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ84UQ31e-105C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLS8DKR41e-163S8DKR4_9LAMI; Uncharacterized protein
STRINGMigut.N01445.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-97C3H family protein