PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678355752
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 248aa    MW: 28575.3 Da    PI: 10.0121
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678355752genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.12.3e-14752147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r  W +eEd +l ++v  +G+++W++ a+ +  gR++k+c++rw++ 
        678355752  7 REHWRPEEDAKLRRLVGAYGTHNWNAMAESLK-GRSGKSCRLRWFNQ 52
                     678****************************9.***********996 PP
2Myb_DNA-binding53.94.1e-1759102146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ ++  +G++ W+ Iar+++ gRt++ +k+ w+ 
        678355752  59 RSPFTAEEEERLLACHMVHGNR-WSMIARHFP-GRTDNAIKNQWHV 102
                      789*******************.*********.***********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.002253IPR017930Myb domain
SMARTSM007171.8E-12655IPR001005SANT/Myb domain
SuperFamilySSF466895.62E-287100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-25960IPR009057Homeodomain-like
CDDcd001676.44E-121051No hitNo description
PfamPF139217.7E-151070No hitNo description
PROSITE profilePS5129423.5254108IPR017930Myb domain
SMARTSM007171.2E-1458106IPR001005SANT/Myb domain
CDDcd001671.32E-1161101No hitNo description
Gene3DG3DSA:1.10.10.609.8E-2261107IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MREMSSREHW RPEEDAKLRR LVGAYGTHNW NAMAESLKGR SGKSCRLRWF NQLDPRINRS  60
PFTAEEEERL LACHMVHGNR WSMIARHFPG RTDNAIKNQW HVIMARKRRN MVRKEEQKAS  120
NICSTQEGSH HHRPATHFTI QLHDDIFYNR NVEQVYLSLP PFLPRAPVVG FPSAARMSRC  180
CRRGSADFMQ VSDAFDADAK RAGEVEFYDF FQGRREVGGT AGGAEGSKIS IPFTDFLPLG  240
NSSSYYIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-291010710107B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMap678355752
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022889937.12e-65transcription factor MYB52-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17842466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-57myb domain protein 52