PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678356266
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17197.4 Da    PI: 4.429
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678356266genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.33.4e-071052244
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
               +i +   r   f k ++ + K A ELSvLC+  va+ i  ++g
  678356266 10 PIADLKARRNAFKKKKTSLEKSAGELSVLCGDAVAMSIETEDG 52
               67777788899********************999988777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.928152IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.03E-11163IPR002100Transcription factor, MADS-box
SMARTSM004320.0014160IPR002100Transcription factor, MADS-box
PfamPF003194.5E-71152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGRGKLHLKP IADLKARRNA FKKKKTSLEK SAGELSVLCG DAVAMSIETE DGPWTWSSGP  60
GALEHLAVEE ASNGAFKTYT LDDFVDRGAE EMSDSDNTEF QSMSTGDLWR LSDALNMQVD  120
AAMERTNVLG MMTLLYSPVR EIPALTPGVD PEQSFYC
Cis-element ? help Back to Top
SourceLink
PlantRegMap678356266
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.12e-08AGAMOUS-like 18