PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678356329

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

M-type_MADS

Protein Properties

Length: 155aa MW: 16798.9 Da PI: 4.4009

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678356329	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	21.4	3.3e-07	10	52	2	44
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +i + r f k ++ + K A ELSvLC+ va+ i ++g 678356329 10 PIADLKARRNAFKKKKTSLEKSAGELSVLCGDAVAMSIETEDG 52 67777788899********************999988777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	14.928	1	52	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.98E-11	1	64	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0014	1	60	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.4E-7	11	52	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MGRGKLHLKP IADLKARRNA FKKKKTSLEK SAGELSVLCG DAVAMSIETE DGPWTWSSGP 60 GALEHLAAEE ASNGAFKTYT LDDFVDRGAE EMSDSDNTEF QSMSTGDLWR LSDALSMQVD 120 AAMERMLGMM TAVFSPVPEN PVLTPGVDPA QSFYC

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678356329

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13790.1	4e-08	AGAMOUS-like 15