PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678357494
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 167aa    MW: 19276.4 Da    PI: 10.3905
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678357494genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.23.6e-35101111101
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                aCa+Ck++r kC+++C+lapyfp++qp+kf+nvh+lFG+++++k+lk+l++++ r+da++++vyeAe+r r P+ G++ ++++l+ ql+++ + l+ +++
  678357494  10 ACASCKFQRIKCSPSCPLAPYFPSDQPEKFQNVHRLFGVAKIIKTLKNLKNKTeRDDAITAMVYEAEIRRRFPMLGCTLILRRLEDQLACATNRLQWVQS 109
                7************************************************65554******************************************9998 PP

     DUF260 100 el 101
                +l
  678357494 110 QL 111
                75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.6959111IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3310108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
SPVTGGAVPA CASCKFQRIK CSPSCPLAPY FPSDQPEKFQ NVHRLFGVAK IIKTLKNLKN  60
KTERDDAITA MVYEAEIRRR FPMLGCTLIL RRLEDQLACA TNRLQWVQSQ LEMRRKKFRN  120
HDAKMAVLQR DHSKAVLVPS PRLEPPRFQP ITERTDENLD NCDQRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-2411052101LOB family transfactor Ramosa2.1
5ly0_B2e-2411052101LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678357494
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A4D9C4N96e-41A0A4D9C4N9_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14492375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-25LOB domain-containing protein 27