PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678357595

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

LBD

Protein Properties

Length: 150aa MW: 17583.5 Da PI: 9.195

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678357595	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	117.7	7e-37	11	112	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCa+Ck++rrkC+++C lapyfp++qp+kf+n+h+lFG+++++k+lk+l+++ r++a++++vyeAe+r r P +G++ +i++l+++l++++++l+++ke 678357595 11 ACASCKFQRRKCPPNCRLAPYFPSDQPEKFQNMHRLFGVAKIIKTLKSLKNKYeRDRAIEAMVYEAEMRRRYPTSGCTTMIRRLRWELACEANQLQRVKE 110 7**********************************************76655*****************************************999 PP DUF260 100 el 101 +l 678357595 111 QL 112 85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.98	10	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-34	11	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MSSVIDGAVP ACASCKFQRR KCPPNCRLAP YFPSDQPEKF QNMHRLFGVA KIIKTLKSLK 60 NKYERDRAIE AMVYEAEMRR RYPTSGCTTM IRRLRWELAC EANQLQRVKE QLRMCRKKVA 120 DCEANMEVLR WDDCAIPRLQ PIIQHTDEES

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-24	7	143	7	129	LOB family transfactor Ramosa2.1
5ly0_B	2e-24	7	143	7	129	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678357595

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G9GDN9	3e-37	A0A2G9GDN9_9LAMI; Uncharacterized protein
TrEMBL	S8CDT2	1e-37	S8CDT2_9LAMI; Uncharacterized protein (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-29	LOB domain-containing protein 22