PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678357649
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ZF-HD
Protein Properties Length: 246aa    MW: 27876.5 Da    PI: 8.1909
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678357649genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.36.5e-3254110259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  +k+rYkeClkNhA+++Ggha+DGCgEf+++ ge+gt ++lkCaAC+CHRnFHR+e+e+
    678357649  54 MKWRYKECLKNHAVEIGGHALDGCGEFIAA-GEDGTLESLKCAACNCHRNFHRKEHEH 110
                  579**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2152109IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-2956108IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.1E-2957107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08458107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.4E-18174244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-30175244IPR009057Homeodomain-like
TIGRFAMsTIGR015654.5E-25183239IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MNISHRHTVE VFLKPAMEFE DQEEEQVGEV ELGLTTHDGK MPTPVNSSPP LSSMKWRYKE  60
CLKNHAVEIG GHALDGCGEF IAAGEDGTLE SLKCAACNCH RNFHRKEHEH DGFALHRHRQ  120
ILLASHNGPQ GHLGYRGPGG YFHLTPPPHQ RRVPLLALPS SSGGGPRDDM EEYYSNPSSS  180
GGKKRMRTKF SQDQKDKMLS FSDRLGWRIQ KQDEDLVQQF CHEVGIKRNV LKVWMHNNKH  240
TLGKKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221842411875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtEssential protein. Putative transcription factor.
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678357649
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554326.13e-99zinc-finger homeodomain protein 2-like
SwissprotA2Z2595e-63ZHD1_ORYSI; Zinc-finger homeodomain protein 1
SwissprotQ6YXH55e-63ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
SwissprotQ9SB614e-63ZHD2_ARATH; Zinc-finger homeodomain protein 2
TrEMBLS8DMV23e-98S8DMV2_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.L00170.1.p1e-76(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.13e-65homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Bueso E,Serrano R,Pallás V,Sánchez-Navarro JA
    Seed tolerance to deterioration in arabidopsis is affected by virus infection.
    Plant Physiol. Biochem., 2017. 116: p. 1-8
    [PMID:28477474]