PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678361019
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LSD
Protein Properties Length: 470aa    MW: 49931.1 Da    PI: 8.7135
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678361019genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD136.39.2e-1278102125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                C+gCr +L+YP GA++V+CalC +V
  678361019  78 CSGCRSVLMYPSGASNVCCALCSAV 102
                **********************998 PP
2zf-LSD1468.7e-15117141125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                CggCrtlL+Y+rGA sVRC++C+tV
  678361019 117 CGGCRTLLMYTRGAASVRCSCCHTV 141
                ************************9 PP
3zf-LSD143.55.1e-14153177125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+C+++L+YP+GApsV+Ca+C+ V
  678361019 153 CGNCHVMLMYPYGAPSVKCAVCQYV 177
                **********************987 PP
4zf-LSD137.44.2e-12280304125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                CggCr lL+YP GA++V+Ca+C +V
  678361019 280 CGGCRSLLMYPSGASNVCCAVCSAV 304
                **********************998 PP
5zf-LSD1468.7e-15319343125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                CggCrtlL+Y+rGA sVRC++C+tV
  678361019 319 CGGCRTLLMYTRGAASVRCSCCHTV 343
                ************************9 PP
6zf-LSD143.55.1e-14355379125
    zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                Cg+C+++L+YP+GApsV+Ca+C+ V
  678361019 355 CGNCHVMLMYPYGAPSVKCAVCQYV 379
                **********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.4E-1275105IPR005735Zinc finger, LSD1-type
PfamPF069439.0E-1078102IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-16114143IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-12117141IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.32E-10117157IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.105.7E-7130175No hitNo description
TIGRFAMsTIGR010539.4E-11150180IPR005735Zinc finger, LSD1-type
PfamPF069439.3E-13153177IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.0E-13277307IPR005735Zinc finger, LSD1-type
PfamPF069432.1E-10280304IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.0E-16316345IPR005735Zinc finger, LSD1-type
PfamPF069432.6E-12319343IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.32E-10319360IPR011031Multihaem cytochrome
Gene3DG3DSA:3.90.10.105.7E-7328359No hitNo description
TIGRFAMsTIGR010539.4E-11352382IPR005735Zinc finger, LSD1-type
PfamPF069439.3E-13355379IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MDERRPHPTT GGGKLRGRCR VSRISFPSFW IVRRKDHNSV PIDGFGTGKV VKFELLFVLP  60
AVFGRFWERR EMQSQIVCSG CRSVLMYPSG ASNVCCALCS AVTTVPPPGM EMAQLICGGC  120
RTLLMYTRGA ASVRCSCCHT VNLAPANVAH VNCGNCHVML MYPYGAPSVK CAVCQYVTNV  180
SMANASAPIP MQRPIEQNSS ASTPSSSSVS LVIFMEPSHG MHLHFHLPDL LQALPSPKSQ  240
TVVIENPMSV DKTGKLVSNV VVGVTTSKKG RTEMQSQIVC GGCRSLLMYP SGASNVCCAV  300
CSAVTTVPPP GMEMAQLICG GCRTLLMYTR GAASVRCSCC HTVNLAPANV AHVNCGNCHV  360
MLMYPYGAPS VKCAVCQYVT NVSMANVRVP IPMQRPNGPN SSTSTPSSSS ALPSPKNQTV  420
VIENPMSVDK TGKLVSNVVI GVVGVNQQRQ PHNSSEPKVL TGSTEGAGEA
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678361019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011069944.18e-98protein LSD1
SwissprotQ6ASS22e-66LOL3_ORYSJ; Protein LOL3
TrEMBLA0A2G9GBS61e-92A0A2G9GBS6_9LAMI; Uncharacterized protein
STRINGXP_008225697.14e-84(Prunus mume)
STRINGMigut.J01511.1.p4e-84(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.75e-58LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]