PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678361854

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

HB-other

Protein Properties

Length: 265aa MW: 28070.3 Da PI: 6.1712

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678361854	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.6	1.2e-09	119	161	2	44
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqV 44 +k+ +++keq Lee F+++++++ ++++eLA +l+L+ rqV 678361854 119 KKKLRLSKEQAALLEETFKEHNTLNPKQKKELAIQLKLQPRQV 161 678899************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	7.6E-18	4	96	IPR006712	HD-ZIP protein, N-terminal
Gene3D	G3DSA:1.10.10.60	3.1E-9	106	162	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.12E-8	111	161	IPR009057	Homeodomain-like
PROSITE profile	PS50071	8.908	115	175	IPR001356	Homeobox domain
CDD	cd00086	1.28E-8	119	161	No hit	No description
Pfam	PF00046	5.0E-7	119	161	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MAEEVGLGLS LSLGFPEKPL SPRAATVPFP LNLFRSPLSV VQRGSAADGS CGNRAVFPGI 60 DMNRAATSVI DSDEDAMASS PNSTVSSLSG KRSEREENDG ERGSSSLEID DDGGDASAKK 120 KLRLSKEQAA LLEETFKEHN TLNPKQKKEL AIQLKLQPRQ VEDQTKADGS RLRVSPALLR 180 QPDGGKPQTA EGADGATGTE ALAAALHEHE PSDDSHHVPT MRACQRLIHH AILDSWSCLR 240 PAVSVPSPRT AGQLVGGGRF PIAAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678361854

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089804.1	8e-58	homeobox-leucine zipper protein HAT4
TrEMBL	A0A2G9HT48	3e-58	A0A2G9HT48_9LAMI; Transcription factor HEX
STRING	Solyc01g090460.2.1	2e-42	(Solanum lycopersicum)
STRING	Migut.B01552.1.p	3e-42	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	6e-27	homeobox-leucine zipper protein 3