PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678362329

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Trihelix

Protein Properties

Length: 508aa MW: 57317.4 Da PI: 6.7324

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678362329	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	70.6	2.9e-22	137	251	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk............................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 +Wt+++v++Li+++ +++++ + + k++W++vsk+m+e+gf +sp+qC++k+++lnkryk+++++ +k+ 678362329 137 KWTDNMVRLLITVVYYVGDEAPVSDhgptnddstkkkggsgsgsgsgsaalqkKGKGKWKSVSKAMMEKGFFVSPQQCEDKFNDLNKRYKRVNDILGKGt 236 7************666666654334445555666666777778888888767799**************************************6 PP trihelix 72 tsessstcpyfdqle 86 +++++++ +++d+l+ 678362329 237 SCRVVENPALLDKLD 251 69*******9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.2E-20	135	277	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MGCPRPPKPA AAPVVFSLHG SGFGLDILFL AFIWLRMESE AAIALAMAAT TDMYPRPPPD 60 LQPGANSVLA LEMSLNRNPN QLDFHHSHQQ QQLLPQPKIQ QAFTSHSDDD DPATQTSMGG 120 PENDAAKRKV SPWHRMKWTD NMVRLLITVV YYVGDEAPVS DHGPTNDDST KKKGGSGSGS 180 GSGSAALQKK GKGKWKSVSK AMMEKGFFVS PQQCEDKFND LNKRYKRVND ILGKGTSCRV 240 VENPALLDKL DHLSPKMKDE VKKLLSSKHL FFREMCAYHN TCGHAAVNGV ASQQELDHHL 300 HQTQKPCLHS DEVIVVPNLN KSENEGSKLA AAAIETVLLP ENNVEVAAAE EDENEHEADN 360 EEEDDDIDVD EDDEDRRSRK RYRKGGRSSS GVVQQLEADI INILQDASKS HTEKREWVKG 420 RLAGLEEQRV NIAAQSFELE KQRFKWLKFS SKKEREMERE KVMNERLNLE NERMMLILRH 480 KELDLIHHQL QLQQQTHHHH HHNSHAPK

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MGCPRPPKPA AAPVVFSLHG SGFGLDILFL AFIWLRMESE AAIALAMAAT TDMYPRPPPD  60
LQPGANSVLA LEMSLNRNPN QLDFHHSHQQ QQLLPQPKIQ QAFTSHSDDD DPATQTSMGG  120
PENDAAKRKV SPWHRMKWTD NMVRLLITVV YYVGDEAPVS DHGPTNDDST KKKGGSGSGS  180
GSGSAALQKK GKGKWKSVSK AMMEKGFFVS PQQCEDKFND LNKRYKRVND ILGKGTSCRV  240
VENPALLDKL DHLSPKMKDE VKKLLSSKHL FFREMCAYHN TCGHAAVNGV ASQQELDHHL  300
HQTQKPCLHS DEVIVVPNLN KSENEGSKLA AAAIETVLLP ENNVEVAAAE EDENEHEADN  360
EEEDDDIDVD EDDEDRRSRK RYRKGGRSSS GVVQQLEADI INILQDASKS HTEKREWVKG  420
RLAGLEEQRV NIAAQSFELE KQRFKWLKFS SKKEREMERE KVMNERLNLE NERMMLILRH  480
KELDLIHHQL QLQQQTHHHH HHNSHAPK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	375	383	RRSRKRYRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678362329

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094441.1	1e-132	uncharacterized protein LOC105174138
TrEMBL	A0A2Z7B9K1	1e-127	A0A2Z7B9K1_9LAMI; Uncharacterized protein
STRING	cassava4.1_006702m	1e-122	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-62	sequence-specific DNA binding transcription factors