PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678364660

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

bHLH

Protein Properties

Length: 93aa MW: 10051.4 Da PI: 8.5256

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678364660	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.2	0.00034	29	59	24	55
HCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 24 rellPk.askapskKlsKaeiLekAveYIksLq 55 +l+P+ a ++s K+ +Le+++ Y++sLq 678364660 29 EQLVPEiA--PTSNKVPATKVLEETCSYVRSLQ 59 689998..699*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-5	28	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.5E-5	28	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence Send to blast
MSSRRTSSRR PTSSGITHAQ VAALVGRMEQ LVPEIAPTSN KVPATKVLEE TCSYVRSLQR 60 EVGDLSERLS ELLTAADVGS EEAAVIRALL TRN

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678364660

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016193693.1	2e-29	transcription factor PRE6
Refseq	XP_025641212.1	2e-29	transcription factor PRE6
Swissprot	A2Z730	3e-23	ILI7_ORYSI; Transcription factor ILI7
Swissprot	Q338G6	3e-23	ILI7_ORYSJ; Transcription factor ILI7
TrEMBL	A0A445DNZ6	4e-28	A0A445DNZ6_ARAHY; Uncharacterized protein
STRING	evm.model.supercontig_14.15	1e-26	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26945.1	9e-25	bHLH family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]