PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678364663

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

YABBY

Protein Properties

Length: 302aa MW: 33073 Da PI: 10.0142

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678364663	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	63.7	7.4e-20	172	237	4	66
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas...qllaaeshldes 66 +s+ +++Cyv+CnfCntilav +P++ l+++vtv+CGhC +l ++ + ++ +a++ l+ + 678364663 172 QSADQHLCYVRCNFCNTILAVGIPYKRLMETVTVKCGHCGNLSFLTTKSPPndhHQPSAHQGLGSD 237 67889***********************************98666554322221333444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	3.7E-19	175	224	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MANKCSPDLT GNLHRPTSTL VTRLPPEKSG PALINKAVLL SRFHSIDFGK RQYPPALIPR 60 PMTPRNQKKS GVRVPEEEEL ILQGGGECTD QGLLPSHHLR LRLPVGFNFF NWVGYGPLSD 120 SGPSLLQYSV GPCMEPKAHA EVQVAQAAIN SASLLRLPHR FHLTMEHSGS QQSADQHLCY 180 VRCNFCNTIL AVGIPYKRLM ETVTVKCGHC GNLSFLTTKS PPNDHHQPSA HQGLGSDFKK 240 ASSSTSLTIS TDPPSPKAQF VVKRMNVPFT SSILFTISNS SLPPHFQLRR RSTASLPLTI 300 AS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678364663

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5210	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	7e-22	YABBY family protein