PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678364731
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family bHLH
Protein Properties Length: 339aa    MW: 37981.6 Da    PI: 9.4133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678364731genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-14106155255
                HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h+  E+rRR++iN++++ L++l+P +    ++K + a+ L ++++Y+k Lq
  678364731 106 RSKHSVTEQRRRRKINERYQILKRLIPDS----DPKRDTASFLLEVINYVKFLQ 155
                899*************************9....8*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-19104174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.383104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-13106159No hitNo description
SuperFamilySSF474599.29E-17106181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-11106155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-10110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MILSYSKLSL IKLKPATAQQ ASLASEHWGR YLNFVGCIFY RSLCVVRVKR VSIGGETRKE  60
MKAGKNHQEE EEDEDEEFGG KRDIDVIPST NPSRDGKSSG KANVTRSKHS VTEQRRRRKI  120
NERYQILKRL IPDSDPKRDT ASFLLEVINY VKFLQEKVQK YEGSYQTWSS GPTKLMPWRN  180
SHWPVHSFVS ESQNSALRHS VQQNSVEQEA HCGSLDQETE LSKNGPPPDG PTGWPSYCDA  240
LNHQGELKNE GGTVSISSLY SQRLLNSLTQ ALQLTGLDLS QATVSVKVNL GKQVDRSSMT  300
RISPKDHGIP LMPGGQAVGN FEEPGQGEDV DRSKKRQKA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105117RSKHSVTEQRRRR
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678364731
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027151692.16e-86transcription factor BIM2 isoform X2
SwissprotQ9CAA42e-65BIM2_ARATH; Transcription factor BIM2
TrEMBLA0A0H3Y8Y96e-86A0A0H3Y8Y9_SALMI; Basic helix-loop-helix transcription factor
STRINGMigut.L01158.1.p6e-83(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44262337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.12e-64BES1-interacting Myc-like protein 2
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]