PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678366121
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family BBR-BPC
Protein Properties Length: 237aa    MW: 26473.2 Da    PI: 10.0131
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678366121genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind50.31e-151653297
  GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpv 97
               +aerda+i+ernla+sekk a+aerdma l+rd+a+aern a++erdn++++l+  ++++++ +p 
  678366121  1 MAERDAAIQERNLAISEKKTALAERDMAILHRDAAIAERNTAILERDNAIATLQC-RHGVKHIQPR 65
               78**************************************************998.5556666655 PP
2GAGA_bind2424.1e-7486237154301
  GAGA_bind 154 qrakkpkekkak..kkkkksekskkkvkkesader......skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLP 245
                +r+k+p+e k+   + kk s++sk+  k+e++d++       k++++++     +v++De+t+PvPvCsCtG+ r CYkWG+GGWqS+CCt+++S+yPLP
  678366121  86 HRGKHPREMKHIasASKKASKASKRVIKQEGHDSSnrliapCKQDWQEQ----HQVAFDETTMPVPVCSCTGVVRPCYKWGSGGWQSSCCTMNLSMYPLP 181
                3333343333322133444455555555555552223333366666666....69********************************************* PP

  GAGA_bind 246 vstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                + +++r+aR++grKmS++af klL++La++G+dlsnpvDLk+hWAkHGtn+++tir
  678366121 182 ALPNKRHARVGGRKMSGSAFGKLLSRLAENGHDLSNPVDLKEHWAKHGTNRYITIR 237
                *******************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.5E-841237IPR010409GAGA-binding transcriptional activator
SMARTSM012262.0E-931237IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAERDAAIQE RNLAISEKKT ALAERDMAIL HRDAAIAERN TAILERDNAI ATLQCRHGVK  60
HIQPRIVEPQ YDSSSLSIEP PSMNPHRGKH PREMKHIASA SKKASKASKR VIKQEGHDSS  120
NRLIAPCKQD WQEQHQVAFD ETTMPVPVCS CTGVVRPCYK WGSGGWQSSC CTMNLSMYPL  180
PALPNKRHAR VGGRKMSGSA FGKLLSRLAE NGHDLSNPVD LKEHWAKHGT NRYITIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678366121
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018628858.11e-105PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X3
RefseqXP_019244942.11e-105PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
SwissprotQ8L9992e-92BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A076L2D61e-103A0A076L2D6_TOBAC; GAGA-binding transcriptional activator
TrEMBLA0A1J6J2731e-103A0A1J6J273_NICAT; Protein basic pentacysteine6
TrEMBLA0A1U7Y9Y31e-103A0A1U7Y9Y3_NICSY; protein BASIC PENTACYSTEINE6-like
STRINGXP_009798749.11e-104(Nicotiana sylvestris)
STRINGXP_009610156.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA53532338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.22e-92basic pentacysteine 6