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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | 678366762 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 202aa MW: 22491.7 Da PI: 8.772 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 15.9 | 3.6e-05 | 92 | 114 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C C+k+F+++ L H++ H
678366762 92 FQCRLCTKRFPNPQALGGHQNAH 114
89******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 7.41E-6 | 89 | 119 | No hit | No description |
| PROSITE profile | PS50157 | 10.554 | 92 | 119 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 94 | 114 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 202 aa Download sequence Send to blast |
MWLLLNVALN AVPHATVNSK VPHASKSTTT NTTSRFTLYR LFQTSKYEME ENPPTAQVAC 60 EPISLPSPSP AFKLFGFTVT RLGNDEEESK MFQCRLCTKR FPNPQALGGH QNAHKKRRQR 120 TPRIRFPPNR GWLATGRVGG DDSLFDARLP TQDFTCLPPE FLLGVPFWKC VGFLSAPPAH 180 VDTDGPRESG GMEEVVDVGL HL |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | 678366762 |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1473 | 15 | 26 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06650.1 | 3e-11 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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