PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678367498

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

WOX

Protein Properties

Length: 347aa MW: 39046.7 Da PI: 11.6518

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678367498	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.2e-18	44	104	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++ +eq+++Le+ F++ +++p+++e++++ +l ++ +++V++WFqNr+ + k+ 678367498 44 KPRWNPRPEQIRILEAIFNSgTMNPTRDEITKIRIQLqeygQVGDANVFYWFQNRKSRSKN 104 89***************99***********************************995 PP
2	Wus_type_Homeobox	107.6	7.3e-35	43	106	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW+P+peQi+iLe++++sG+ +P+++ei++i+ +L+eyG+++d+NVfyWFQNrk+R+++kq 678367498 43 PKPRWNPRPEQIRILEAIFNSGTMNPTRDEITKIRIQLQEYGQVGDANVFYWFQNRKSRSKNKQ 106 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-13	39	111	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.046	40	105	IPR001356	Homeobox domain
SMART	SM00389	7.2E-9	42	109	IPR001356	Homeobox domain
CDD	cd00086	8.27E-8	43	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-8	43	111	IPR009057	Homeodomain-like
Pfam	PF00046	8.2E-16	44	103	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MASSNRHWPS MFKTKRHPQG NHEINISNNC HRTQCSSERT PEPKPRWNPR PEQIRILEAI 60 FNSGTMNPTR DEITKIRIQL QEYGQVGDAN VFYWFQNRKS RSKNKQRQQQ HNVAAVNCPA 120 PAPQTTPRPP PAAVPHCDIP SSNMRAKTPD PQPTPRTTKP TVPSDFLSQP TFLFQPKSTY 180 GSGYCSPDRS CPGLPISEVM VMSQCHCHPF PHSPALPPPP NAQTLVPVIS HNLTLQLLLF 240 LRRWWGRGIH DIDGLHQRRV LRDRIRAVQR DGSLRGRRRA HPLDGASGLN GRMGRHAAAV 300 TARRLLLSSP AVRAAVSGHR PFGLVRIFLS IKGSISLSDR LKCLQQI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MASSNRHWPS MFKTKRHPQG NHEINISNNC HRTQCSSERT PEPKPRWNPR PEQIRILEAI  60
FNSGTMNPTR DEITKIRIQL QEYGQVGDAN VFYWFQNRKS RSKNKQRQQQ HNVAAVNCPA  120
PAPQTTPRPP PAAVPHCDIP SSNMRAKTPD PQPTPRTTKP TVPSDFLSQP TFLFQPKSTY  180
GSGYCSPDRS CPGLPISEVM VMSQCHCHPF PHSPALPPPP NAQTLVPVIS HNLTLQLLLF  240
LRRWWGRGIH DIDGLHQRRV LRDRIRAVQR DGSLRGRRRA HPLDGASGLN GRMGRHAAAV  300
TARRLLLSSP AVRAAVSGHR PFGLVRIFLS IKGSISLSDR LKCLQQI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678367498

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5942	23	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	5e-42	homeobox-3