PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678369723
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HB-PHD
Protein Properties Length: 772aa    MW: 85846.9 Da    PI: 4.819
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678369723genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.25.7e-136556971052
                HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
   Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                  ++ L + F +n+yp++ ++e+LA++lg++ rqV+ WF N R
  678369723 655 AVTQKLYSSFLENKYPDKFSKEKLANELGISVRQVSKWFENAR 697
                56899************************************99 PP
2PHD37.84.5e-13271326151
                SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
        PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                +C+ Cg+   + +++++lCdg C + fH++Cl+++l +e +p g   w+C+ C++k
  678369723 271 FCAKCGSkdLTLDNDIILCDGaCVRGFHQYCLEPPLLKEHIPPGdeGWICPGCDCK 326
                699***965555********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.32E-13262329IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.103.4E-12268326IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.789269326IPR019787Zinc finger, PHD-finger
PfamPF006281.5E-10271326IPR019787Zinc finger, PHD-finger
CDDcd155047.51E-26271323No hitNo description
SMARTSM002492.5E-8271324IPR001965Zinc finger, PHD-type
PROSITE patternPS013590272323IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.602.3E-13632697IPR009057Homeodomain-like
PROSITE profilePS5007112.617643703IPR001356Homeobox domain
CDDcd000867.45E-12644697No hitNo description
SMARTSM003892.9E-10645707IPR001356Homeobox domain
SuperFamilySSF466891.2E-11645705IPR009057Homeodomain-like
PfamPF000462.0E-10655697IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 772 aa     Download sequence    Send to blast
MIWCLAPAMS ELPRSIENPH QYPEMKQEDN HDVVIKNMQP SDTGIKQSVN IEKTTQKLDG  60
LNGFSVFGAQ DVALQYDSSM LTCTPTLGIS VIPSDGIAPE TSVSYEFTEL GNEHKGSSDK  120
RRKDKSKLTG PVLSSWSLRS KSQEKPKSPE PGESAKEFDV NREERRGRKR KLSTKNNVNE  180
FSRTKTHLRY LLHRIKYEQS LIDAYSAEGW KGQSLEKLKP EKELQRAKSH ILRYKLKIRA  240
LFEHLDQSLA NGRLPESLFD STGEIDSEDI FCAKCGSKDL TLDNDIILCD GACVRGFHQY  300
CLEPPLLKEH IPPGDEGWIC PGCDCKQDCI DMLKDFHSTE VSLTDSWENI FPEVAEAASG  360
NNLDTVFASF DDSEDDDYEP DKPEISQKDS DGQTTSSESG YFSAPDGLAP CENETQQLGG  420
LPSEDSEDGD FDPSVMHQEE PAMSESSDFT SDSEDLGALL EDEMDNQNLP LDNVQPSVDS  480
KENDYAVDGM KRQSLAQELS FHSESAVECV SGKRHVERLD YKKLHDVSAA FQLYLSLIFL  540
KLCLFRLIVL FGLCSLPKEA FGNYSSDSSD EDFEEASAAK KKISYHEKTQ VKSSSQTSFR  600
TVSAGSVDEN VRSSNVPKRT RRPTPDADSG EQLSHSGSDN KGSRRSSTYK RLGEAVTQKL  660
YSSFLENKYP DKFSKEKLAN ELGISVRQVS KWFENARWSF NHRPKPESSV THNPPENPST  720
PDALGNHSSH IVGLQESPGV VNYAPGAESS ARETTGNALK PSQRSGGVDR VG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170RRGRKRK
2164171RRGRKRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678369723
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012836886.10.0PREDICTED: homeobox protein HAT3.1
RefseqXP_012836887.10.0PREDICTED: homeobox protein HAT3.1
TrEMBLA0A022RBH90.0A0A022RBH9_ERYGU; Uncharacterized protein
STRINGMigut.B00404.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-88Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain