PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678370149
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WOX
Protein Properties Length: 252aa    MW: 28281.1 Da    PI: 10.0648
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678370149genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.1e-2197156357
                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                +R+++t+ qle+Le  +++ +r+p+a+++++++++l    +++ ++V++WFqNr+a+ekk
  678370149  97 TRWNPTPAQLEALEGIYRRgTRTPTADQIQQITARLkrlgNIERKNVFYWFQNRKAREKK 156
                8*****************99***************************************8 PP
2Wus_type_Homeobox102.62.7e-3396157364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        +tRW+Ptp Q++ Le +y++G+rtP++++iq+ita+L++ G+ie kNVfyWFQNrkaRe++k
          678370149  96 STRWNPTPAQLEALEGIYRRGTRTPTADQIQQITARLKRLGNIERKNVFYWFQNRKAREKKK 157
                        79**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.9E-694161IPR001356Homeobox domain
CDDcd000863.86E-997158No hitNo description
Gene3DG3DSA:1.10.10.606.5E-1197157IPR009057Homeodomain-like
SuperFamilySSF466891.5E-1397162IPR009057Homeodomain-like
PfamPF000466.1E-1997156IPR001356Homeobox domain
PROSITE profilePS5007112.034102157IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MSFLVSSSCL LRSNSHSSLS PSPNIVPTPS FVHSYITCTH APGSWLPPST TMMNHGEVRC  60
LPDPVSGHRM QLHDPQNPNI FPLHGEAKAA APCVVSTRWN PTPAQLEALE GIYRRGTRTP  120
TADQIQQITA RLKRLGNIER KNVFYWFQNR KAREKKKNRR LFELFPDEKW ILPSRKKQPG  180
SVDIAEDGRD KLSRLTGSSS IYSSSSTPTE GRAVKGEGDH EAEACQESGN PFAWRRIVAP  240
PHEFIEFLPT KK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160EKKKNRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678370149
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583454.11e-30WUSCHEL-related homeobox 1
RefseqXP_028239925.11e-30WUSCHEL-related homeobox 1-like
TrEMBLA0A0B2SHU42e-29A0A0B2SHU4_GLYSO; WUSCHEL-related homeobox 1
TrEMBLK7L0T12e-29K7L0T1_SOYBN; Uncharacterized protein
STRINGGLYMA07G11372.14e-30(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122011922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.14e-23WUSCHEL related homeobox 1