PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678370354

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 248aa MW: 26850.1 Da PI: 9.5859

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678370354	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	15	75	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+ ++cprC stntkfCyynnyslsqPr+fCk+CrryWt+GG+lrn+PvGgg+rknkk s 678370354 15 KEQGVNCPRCSSTNTKFCYYNNYSLSQPRHFCKTCRRYWTEGGSLRNIPVGGGSRKNKKPS 75 68999*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	8	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.2E-33	17	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.938	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MKSCSVEKKV SRPQKEQGVN CPRCSSTNTK FCYYNNYSLS QPRHFCKTCR RYWTEGGSLR 60 NIPVGGGSRK NKKPSSANTH HSTTSSSSSR KIPEFLAHQQ NPKPLEAQDL SLGFSAKNFH 120 VPSFGNASKL ELLHKDPPPP PPPQMIGSSP SHYSFVPLPF IACGDPAVVY SSGFPSLPEL 180 IKPTLNFSLD AGLGSNYGSF QGGPPTNMKE LVFPFEGVKQ GSSRGDQNGD QNADSIGIWN 240 GVLGGGSW

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678370354

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070363.1	8e-76	dof zinc finger protein DOF4.6
TrEMBL	A0A4D8Z9L1	4e-68	A0A4D8Z9L1_SALSN; Uncharacterized protein
STRING	EOY23946	2e-63	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.3	3e-39	Dof family protein