PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678370781
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23328.9 Da    PI: 9.2168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678370781genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.92.1e-211866149
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
               k+ien s rqvtfskRr g++KKA+EL++L +aeva+i+ s   +++++
  678370781 18 KKIENLSSRQVTFSKRRGGLFKKASELCILSGAEVAIIVHSFGKHVFTF 66
               68****************************************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.1231070IPR002100Transcription factor, MADS-box
SMARTSM004324.1E-291069IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-261198IPR002100Transcription factor, MADS-box
CDDcd002652.81E-321183No hitNo description
PRINTSPR004045.3E-181232IPR002100Transcription factor, MADS-box
PfamPF003198.1E-211966IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-183247IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-184768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MSGARIKMTQ GRKKIEIKKI ENLSSRQVTF SKRRGGLFKK ASELCILSGA EVAIIVHSFG  60
KHVFTFGHPT PEAVVERFLN GSALEMSNTP PATMPEFKHH YSDICKELEM EKKRMQGIEE  120
VKRGQGHRGG DWWNNVIVDE LKLEELEQFA AAMEELVKNL LLRADDLRLA QTTPISFRTP  180
PEAMRSPDFG AVVLLNQPRG SDNFHGL
Cis-element ? help Back to Top
SourceLink
PlantRegMap678370781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012835329.16e-63PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2G9HQQ65e-67A0A2G9HQQ6_9LAMI; Uncharacterized protein
STRINGMigut.N01120.1.p2e-62(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-37AGAMOUS-like 62