PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678371365
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27080.8 Da    PI: 7.9006
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678371365genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.9e-28959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krienk+nrqvtf+kRr+g+ KKA ELSvLCdae+ +i+fss+gkly+++s
  678371365  9 KRIENKINRQVTFAKRRAGLWKKARELSVLCDAEIVMIVFSSRGKLYDFCS 59
               79***********************************************96 PP
2K-box94.41.8e-31851769100
      K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                + ea + s+qqe+ kLk+++e Lqr+qR+llGedL++L+ keL++Le+qL+ slk+iRs++++ +l+ + +lq+ke++l+e+nk+L+++l+e
  678371365  85 TREALELSSQQEYLKLKARYEALQRTQRNLLGEDLGPLNSKELESLERQLDASLKHIRSTRTQAMLDTLADLQRKEHALNEANKNLKQRLME 176
                455556789*******************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.455161IPR002100Transcription factor, MADS-box
CDDcd002658.38E-41277No hitNo description
SuperFamilySSF554552.49E-30282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-29323IPR002100Transcription factor, MADS-box
PfamPF003195.5E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-293859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.46290181IPR002487Transcription factor, K-box
PfamPF014861.1E-2592174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRAGLWK KARELSVLCD AEIVMIVFSS RGKLYDFCSS  60
SSTMLETLEK YQNSNYGPPE TNVSTREALE LSSQQEYLKL KARYEALQRT QRNLLGEDLG  120
PLNSKELESL ERQLDASLKH IRSTRTQAML DTLADLQRKE HALNEANKNL KQRLMEGCQI  180
SLQWDSSACD VAYGGQPHHQ AQPDVFLHPL DCEPTLQIGY QNDHLAVAAG PTMTSWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-43761771104Developmental protein SEPALLATA 3
4ox0_B1e-43761771104Developmental protein SEPALLATA 3
4ox0_C1e-43761771104Developmental protein SEPALLATA 3
4ox0_D1e-43761771104Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678371365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027096723.11e-134agamous-like MADS-box protein AGL9 homolog isoform X2
SwissprotQ034891e-130AGL9_PETHY; Agamous-like MADS-box protein AGL9 homolog
TrEMBLA0A068UXU41e-133A0A068UXU4_COFCA; Uncharacterized protein
TrEMBLE9JPX21e-133E9JPX2_COFAR; MADS-box protein AGL2 subfamily
STRINGXP_009797140.11e-129(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.11e-108MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG,Gadella TW,Ferrario S,Busscher M,Angenent GC
    Analysis of MADS box protein-protein interactions in living plant cells.
    Proc. Natl. Acad. Sci. U.S.A., 2002. 99(4): p. 2416-21
    [PMID:11854533]
  2. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  3. Angenent GC,Busscher M,Franken J,Mol JN,van Tunen AJ
    Differential expression of two MADS box genes in wild-type and mutant petunia flowers.
    Plant Cell, 1992. 4(8): p. 983-93
    [PMID:1356537]
  4. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]