PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678373236
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family CO-like
Protein Properties Length: 294aa    MW: 32673.7 Da    PI: 7.176
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678373236genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-061048540
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
                C+ +   e   +C+ +  +lC +C + +H     H++v
  678373236 10 LCEGCRAAESAVYCRVDAAYLCVSCDSRIHITalhHDRV 48
               7******99********************9447767665 PP
2zf-B_box23.31.4e-074793242
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
               + r C+ ++  ++   C+ ++  lC  C  ++H+       H +vp+
  678373236 47 RVRLCASCSYAPAVVLCKADSASLCIACDHKIHSAnllaarHHRVPI 93
               5689*****************************66899999877775 PP
3CCT69.96.4e-24249293145
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 
                Rea++lRY+eK+k+R+FeK+irY+sRKa+Ae RpR+KGrFvkqa+
  678373236 249 REARVLRYREKKKSRRFEKTIRYASRKAYAEVRPRIKGRFVKQAD 293
                9*****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.936650IPR000315B-box-type zinc finger
SMARTSM003360.23643IPR000315B-box-type zinc finger
CDDcd000218.68E-6950No hitNo description
PROSITE profilePS5011910.4524693IPR000315B-box-type zinc finger
SMARTSM003361.6E-104693IPR000315B-box-type zinc finger
PfamPF006432.8E-54893IPR000315B-box-type zinc finger
CDDcd000214.47E-64993No hitNo description
PROSITE profilePS5101716.479249291IPR010402CCT domain
PfamPF062031.7E-17249291IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MMNMKATGVL CEGCRAAESA VYCRVDAAYL CVSCDSRIHI TALHHDRVRL CASCSYAPAV  60
VLCKADSASL CIACDHKIHS ANLLAARHHR VPIQPMTDAI PGPPRHTFTG SNIPESSDGG  120
AMENDADEDD EEEAASWLLL NPPNGKANRN DGLRFGEFLE LADFGSSPNL DQCNKEESNQ  180
KQEYNVHQRQ FFQLGMKYED PKAVDFVPAS SFYSTPSMAP DTATQGSFSQ TKQLRDDASD  240
PFPGCAVDRE ARVLRYREKK KSRRFEKTIR YASRKAYAEV RPRIKGRFVK QADG
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678373236
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022005335.11e-69zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-67COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLE3TPZ02e-68E3TPZ0_HELAN; CONSTANS-like 2
STRINGSolyc02g089540.2.19e-68(Solanum lycopersicum)
STRINGPGSC0003DMT4000260651e-67(Solanum tuberosum)
STRINGA0A087H6F01e-68(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-65CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]