PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678373485

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

SBP

Protein Properties

Length: 618aa MW: 69348 Da PI: 8.6483

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678373485	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	39.1	2e-12	11	40	48	77
SEEETTT--SS--S-STTTT-------S-- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkq 77 rfh l +fDe+krsCrr+L++hn+rrr+k+ 678373485 11 RFHPLPDFDEGKRSCRRKLERHNNRRRRKS 40 9**************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	13.255	1	39	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.8E-7	11	39	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-9	11	42	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence Send to blast
MKVLEKKRSI RFHPLPDFDE GKRSCRRKLE RHNNRRRRKS DDSKQSLGKE AQQINLEDHV 60 SGDGDSGKDG VGVSSRMEEG GPSLESEGHE TCPSLGLQRQ QSDEINADVQ KQDSIQRSSP 120 SSGENKNAFS SACPTARISF KLYDWNPAEF PRRLRLQIFE WLKSMPVELE GYIRPGCTIL 180 TAFVAIPRPI WRKVLDDPIL NIRILLSSPS NELYQRGSML IYMNDTAFRV TKDRKALVKV 240 KVKDCCPRLH YVHPTCFVAG RPIEFVACGS NLLQSNLRFL ISFSGRYLAY NISVPSRCCM 300 EIFTPSFDHQ LVKIVAPLTD ENLVGPAFVE VSWPGYLISY DINPEGEEPK TIKLAPTFPL 360 QVENQLGLSN FVPILVADRQ TSAEMQLLIQ DLDISPFAGK KKPCLSCNIM TSRQARISEL 420 LLDVAWLVKP ERDKPLTASD VPRFNSLLKF LIEKESSAVL ERVLGSLSSA LSKYSGNGVS 480 LTDMSALHKN IRHAERMLLL SKGKFYFPCS QMPDQLLAPA TNTETVKDMN MAREISESQD 540 SCSSVPLLAA DVEMKVNHDN SRTWRHLRLA LTPSLLTARS LTAMTALFLC VGACMLIFHP 600 HSVSLIAVTI RRCMFGIS

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence Send to blast

MKVLEKKRSI RFHPLPDFDE GKRSCRRKLE RHNNRRRRKS DDSKQSLGKE AQQINLEDHV  60
SGDGDSGKDG VGVSSRMEEG GPSLESEGHE TCPSLGLQRQ QSDEINADVQ KQDSIQRSSP  120
SSGENKNAFS SACPTARISF KLYDWNPAEF PRRLRLQIFE WLKSMPVELE GYIRPGCTIL  180
TAFVAIPRPI WRKVLDDPIL NIRILLSSPS NELYQRGSML IYMNDTAFRV TKDRKALVKV  240
KVKDCCPRLH YVHPTCFVAG RPIEFVACGS NLLQSNLRFL ISFSGRYLAY NISVPSRCCM  300
EIFTPSFDHQ LVKIVAPLTD ENLVGPAFVE VSWPGYLISY DINPEGEEPK TIKLAPTFPL  360
QVENQLGLSN FVPILVADRQ TSAEMQLLIQ DLDISPFAGK KKPCLSCNIM TSRQARISEL  420
LLDVAWLVKP ERDKPLTASD VPRFNSLLKF LIEKESSAVL ERVLGSLSSA LSKYSGNGVS  480
LTDMSALHKN IRHAERMLLL SKGKFYFPCS QMPDQLLAPA TNTETVKDMN MAREISESQD  540
SCSSVPLLAA DVEMKVNHDN SRTWRHLRLA LTPSLLTARS LTAMTALFLC VGACMLIFHP  600
HSVSLIAVTI RRCMFGIS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	25	37	RRKLERHNNRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678373485

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011071504.1	0.0	squamosa promoter-binding-like protein 7
TrEMBL	A0A2G9GY10	0.0	A0A2G9GY10_9LAMI; Uncharacterized protein
STRING	Migut.N00133.1.p	1e-177	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5407	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-104	squamosa promoter binding protein-like 7