PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678374276
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family GATA
Protein Properties Length: 517aa    MW: 57153.6 Da    PI: 9.3044
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678374276genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.32.4e-19229262134
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                C++C++tkTp+WR+gp+g+ktLCnaCG++yr+ +
  678374276 229 CTHCQVTKTPQWREGPRGPKTLCNACGVRYRSGR 262
                *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.4E-17223273IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-14224285No hitNo description
PROSITE profilePS5011411.648227259IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.9E-14227260IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.00E-15228275No hitNo description
PfamPF003203.2E-17229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGVVGPENCW DAYVNSMAGE DNFDNLFNIL DFSMDSLEGN DFVGDCDIES QCLEPIPSNL  60
LIEPLLDNGP LCLSSEPAAS LNHPSKISDA QGTNQGSENI QVSSSSDILQ HVDPHGVSES  120
RFCQTQSPNS VLESSGCSSR KAGVHVPVRA RSKRVRSGVN PWLAASNFVS VTASASKRVS  180
NAKKEREQKK NMSPPYPVAK ENENNILHTV ENSPHVSDKV ESAAVTKKCT HCQVTKTPQW  240
REGPRGPKTL CNACGVRYRS GRLYPEYRPA ASPTFVPTLH SNSHKKMRAV CSIETMYKKL  300
DAEAVASVGK NACSYRGYIR TRQIHESLKT SQGFGQSQQK HDQVCLSTSR KWARFTGDKT  360
QCRRQKHTVH TILANQNQNS HRSTTTERIL RGNPIREKNP AAFFLWLGEV FTTASSSLKI  420
EQTSYKAIPL PIRAFPSTTN PQVILLGKPI NFSESPTIKF SKSPILFASE FFCLPPCRLH  480
VRIAWAFSWT LIQYPRILIQ NDVPAHEKSA AAAAAGR
Cis-element ? help Back to Top
SourceLink
PlantRegMap678374276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020552412.12e-85GATA transcription factor 11-like
TrEMBLA0A2G9HBY51e-82A0A2G9HBY5_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31342149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11