PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

678374763

Organism

Utricularia gibba

Taxonomic ID

13748

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia

Family

Dof

Protein Properties

Length: 172aa MW: 18164.5 Da PI: 9.3318

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
678374763	genome	UGSP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	16	75	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++l+cprC s ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rk+ k+s 678374763 16 PEHLPCPRCSSINTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKSAKRS 75 57899**************************************************98875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	9.0E-27	17	73	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.9E-33	18	73	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	19	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	21	57	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MGGVGAITTI ERKPAPEHLP CPRCSSINTK FCYYNNYNFS QPRHFCKSCR RYWTHGGTLR 60 DIPVGGGTRK SAKRSRAVPS SEELRRAPPG GSFTSLLNSN NSNTHGAGVL GLGFSLDDVG 120 FGLGRPLWPL YGIAEGGVSA VAAHGDGGNF AGGECFPFAD IAAIPAPGSF FK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	678374763

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ857251	1e-47	DQ857251.1 Glycine max Dof2 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101840.1	1e-53	PREDICTED: dof zinc finger protein DOF3.4-like
Refseq	XP_013646932.1	1e-53	dof zinc finger protein DOF3.4
Swissprot	Q39088	3e-39	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A3P5ZJS9	3e-52	A0A3P5ZJS9_BRACM; Uncharacterized protein
TrEMBL	M4EMJ0	3e-52	M4EMJ0_BRARP; Uncharacterized protein
STRING	Bra030010.1-P	4e-53	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4532	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	3e-38	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]