PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678374852
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family HB-other
Protein Properties Length: 393aa    MW: 42928 Da    PI: 7.135
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678374852genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.48.6e-071373654
               S--HHHHHHHHHHHHHSSS..--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHH CS
   Homeobox  6 tftkeqleeLeelFeknry..psaeereeLAkkl..........gLterqVkvWFqNrRak 54
               +f++ ++ e+e+  + ++y  p +e    LA++           +++ +qV +WFqNrR  
  678374852 13 RFNQAEVGEMESILQAHQYlvPPREVLDALAQRFstsaerygkvEVSAKQVWNWFQNRRSA 73
               58888899999999998885556788999999999999999999***************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-8476IPR009057Homeodomain-like
SMARTSM003890.0072781IPR001356Homeobox domain
PROSITE profilePS500718.7941377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-61380IPR009057Homeodomain-like
CDDcd000867.93E-51375No hitNo description
PfamPF000462.4E-41373IPR001356Homeobox domain
PfamPF167192.3E-40134260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFNQAEVG EMESILQAHQ YLVPPREVLD ALAQRFSTSA ERYGKVEVSA  60
KQVWNWFQNR RSALRAKAAR GTVPAQVNAP ALPQHEQSVL RNMPQAPLHQ VLHPKDTQPQ  120
ASAARSHAAE NSVMEFEAKS ARDGAWYDVA YFLSHRALES GNPEVLVRFS GFGAEEDEWV  180
NVLRLVRQRS LPCESSECVA VLPGDLILCF QEGKEQALYF DAHVLDAQRR RHDKRGCRCR  240
FLVRYDHDLS EEIVPLRKIC RRPETDYRLQ QLHAIPPNVN QQKPIIETQS RSVLEGVTTQ  300
QPKANQNVHN VPTTTALGGS SLPAASEPSA AAVSVNPSSE SATHTVAAPL TASSGPSIIP  360
PATAADTTTV ESSISTSNPS AADSKGTQPQ PDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A2e-461342644134SHH1 SAWADEE
4iur_B2e-461342644134SHH1 SAWADEE
4iut_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B2e-461342644134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678374852
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554519.11e-155protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-125SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A4D8YY651e-161A0A4D8YY65_SALSN; Uncharacterized protein
STRINGMigut.M00766.1.p1e-146(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-111sequence-specific DNA binding transcription factors;sequence-specific DNA binding