PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678375168
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26450.9 Da    PI: 6.9938
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678375168genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.78.7e-25958150
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
               k+ien++nrqvtfskRr g++KKA+E+ vLCd++ a+i++s++g+l  +s
  678375168  9 KKIENTTNRQVTFSKRRYGLIKKAYEIAVLCDIDLALIMLSPSGRLSHFS 58
               68********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006627.754161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-32160IPR002100Transcription factor, MADS-box
CDDcd002657.24E-32278No hitNo description
SuperFamilySSF554551.57E-26283IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-23323IPR002100Transcription factor, MADS-box
PfamPF003191.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-232338IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-233859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRSKLPIKK IENTTNRQVT FSKRRYGLIK KAYEIAVLCD IDLALIMLSP SGRLSHFSGR  60
KRVEDVIFRY ISLSDRDRGG HAKSVSQKHY VAWHKERLID NQTIFSCLRF LCGSNPGTTA  120
HCPILIPTLL QEILLSAVEQ PSSYQDTIQQ INTVVQYITD AQVFGVDASL DNHDDHGIEL  180
SAIDHVNFGS DAASATLRER SSPNIFEVIS QTSATQAGHS GEGCQSNNIM DDVFLQCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-16175174MEF2 CHIMERA
6byy_B5e-16175174MEF2 CHIMERA
6byy_C5e-16175174MEF2 CHIMERA
6byy_D5e-16175174MEF2 CHIMERA
6bz1_A5e-16175174MEF2 CHIMERA
6bz1_B5e-16175174MEF2 CHIMERA
6bz1_C5e-16175174MEF2 CHIMERA
6bz1_D5e-16175174MEF2 CHIMERA
Cis-element ? help Back to Top
SourceLink
PlantRegMap678375168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097601.12e-88agamous-like MADS-box protein AGL66
TrEMBLA0A4D9AL801e-81A0A4D9AL80_SALSN; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61831925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-36AGAMOUS-like 66