PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378026
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 160aa    MW: 18299.3 Da    PI: 8.1286
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378026genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.13.1e-2778135158
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                ++Dg++WrKYG+K vk++++pr+YYrC+ +gC+vkkkver++edp+++++tY+  Hnh
  678378026  78 MNDGFRWRKYGKKRVKSTPYPRHYYRCAEKGCRVKKKVERDKEDPRYIITTYHRVHNH 135
                58******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2866136IPR003657WRKY domain
SuperFamilySSF1182902.09E-2571137IPR003657WRKY domain
PROSITE profilePS5081127.85273138IPR003657WRKY domain
SMARTSM007742.8E-2878137IPR003657WRKY domain
PfamPF031065.1E-2279135IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MKNHYVPVYS GPPYPNFTAS TTPDPDLNSP YLQHVANHLL SDHGGGLPEL STFGMLHEEG  60
DEVERVFVFK TESQIEVMND GFRWRKYGKK RVKSTPYPRH YYRCAEKGCR VKKKVERDKE  120
DPRYIITTYH RVHNHGSDPT APSPEDHHAN FSSAAGSSHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-2269135874Probable WRKY transcription factor 4
2lex_A4e-2269135874Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378026
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015884439.11e-31probable WRKY transcription factor 50
STRINGGLYMA04G05700.11e-30(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21242462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.13e-31WRKY DNA-binding protein 50