PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378151
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family LBD
Protein Properties Length: 585aa    MW: 67068.8 Da    PI: 6.5539
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378151genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.61.5e-365101196
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                aCaaCk++rrkC+++Cvlapyfpa++ kkf+ vh+lFG+sn +k+l++l++ + r++am++++ye+e+r r+Pv+G+  vil+l+++le +++el++
  678378151   5 ACAACKHQRRKCTASCVLAPYFPAKEYKKFQSVHRLFGVSNATKILRNLKNARdRDTAMATIIYESEMRRRNPVHGCWIVILHLRRELEYASKELEY 101
                7************************************************77766**************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8864106IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-345100IPR004883Lateral organ boundaries, LOB
SuperFamilySSF479543.71E-30308448IPR013763Cyclin-like
PfamPF001343.1E-25320448IPR006671Cyclin, N-terminal
Gene3DG3DSA:1.10.472.104.1E-25331441IPR013763Cyclin-like
CDDcd000431.46E-11345441No hitNo description
PROSITE patternPS002920346377IPR006671Cyclin, N-terminal
SMARTSM003854.8E-15351442IPR013763Cyclin-like
Gene3DG3DSA:1.10.472.101.7E-6442551IPR013763Cyclin-like
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MPYQACAACK HQRRKCTASC VLAPYFPAKE YKKFQSVHRL FGVSNATKIL RNLKNARDRD  60
TAMATIIYES EMRRRNPVHG CWIVILHLRR ELEYASKELE YIYMLLRMFR EQERKGIKEM  120
ELEMPLRMDL WGHSHDHYDI IHQKPSNGDF KLIQDVLSYE DYDLRSISNV IGDNLSSTNL  180
PMKDIVPPEF ENAAFSFTTR NQSPFNFGCR ISGTATEGCD RNASEHNVVR KTPFIFIPVV  240
MGVVPPMGER DSVDCVVADL LCDEEAESLS LGDGFLGEAQ DFRSRVWSGK KGASFVNGGK  300
ESVPPIELPL QSDEWFGWIV EREKEYLPRY DYLQRLRSGE LDSSLREEAI DWILKACVRH  360
GFGEICLCSA VNYFDRFLSE YDLPKGKPWA SQLVAVASLL LAAKVDEVDV PNAVDLQCGQ  420
QEEPRFLFEA KAVYRMEMLL LNHLKWNIKP HTPLNFVEFF LCKMNQKEEL LHQNTRIARS  480
TQLVSTIIKG VILGPCYPKF NTPFCEKEYV RFRARCELNA GIDFLEFRPS EIAAAVAIHI  540
SSEMQTADAS AKELSCFIQV EKSDEMPTTD AKLKSTQALS QRHHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-22611712122LOB family transfactor Ramosa2.1
5ly0_B1e-22611712122LOB family transfactor Ramosa2.1
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378151
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011097500.15e-98cyclin-D4-1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-31LOB domain-containing protein 22