PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378354
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family WRKY
Protein Properties Length: 500aa    MW: 54875.4 Da    PI: 8.2405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378354genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.4e-32219276159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ++DgynWrKYGqK+vk se+prsYY+Ct+++Cpv+kkvers  d+++ eitY+g+Hnh+
  678378354 219 VNDGYNWRKYGQKQVKASECPRSYYKCTHPDCPVRKKVERSI-DGRISEITYKGQHNHD 276
                58****************************************.***************7 PP
2WRKY105.43e-33389447159
                ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver+++dpk v++tYeg+H+h+
  678378354 389 LDDGYRWRKYGQKVVKGNPYPRSYYRCTYAGCKVRKHVERASTDPKSVITTYEGKHTHD 447
                59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-29210278IPR003657WRKY domain
SuperFamilySSF1182908.63E-26217278IPR003657WRKY domain
SMARTSM007747.4E-35219277IPR003657WRKY domain
PfamPF031061.5E-24220276IPR003657WRKY domain
PROSITE profilePS5081124.294220278IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.8E-36375449IPR003657WRKY domain
SuperFamilySSF1182901.44E-29382449IPR003657WRKY domain
PROSITE profilePS5081137.378384449IPR003657WRKY domain
SMARTSM007741.9E-39389448IPR003657WRKY domain
PfamPF031061.8E-26390447IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGHQEDDASS ASAASKPKPK IHLPPRASME MFFANGSFSP GPMTLVSSLF PDQTHFSFSQ  60
LLVGAMASPL AAPKPPPFAG GFSQDDFDKD KERGLQRNRP PSLVVAPPRQ LPENLSPLLL  120
GMSPSGLLNS PVLLSPLQSP FGMSHQQALA HVTAQAALSQ SFKQMQSEVQ QQELPSSVEA  180
SEANPTNTPL ENLASFPQEQ SLVSSSDHKT ASSVGDKPVN DGYNWRKYGQ KQVKASECPR  240
SYYKCTHPDC PVRKKVERSI DGRISEITYK GQHNHDLPQP SKRVREHGSM DGTGVSQQRP  300
ILPSQEHTEG NRLQGVVSFP SEGSSFQETV QEPFEYGTMP SDFQNNAASV EKEEDMPSAK  360
RRSTEIGQAH QTVMESKIVL KTRSEVDLLD DGYRWRKYGQ KVVKGNPYPR SYYRCTYAGC  420
KVRKHVERAS TDPKSVITTY EGKHTHDLPL GRSGSHPHPT ASTSSQPFKT MPGSGASQSH  480
PVIPEQKPDT LHLKGDEVIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37219449877Probable WRKY transcription factor 4
2lex_A1e-37219449877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap678378354
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085706.11e-175probable WRKY transcription factor 4 isoform X1
SwissprotQ9XI901e-121WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2G9HBE20.0A0A2G9HBE2_9LAMI; Uncharacterized protein
STRINGMigut.H00670.1.p1e-152(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-117WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]