PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678379155
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family ARF
Protein Properties Length: 634aa    MW: 70553 Da    PI: 6.0814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678379155genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.81.7e-22109209299
                EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                 k+lt+sd+++ g +++p+ +ae++         ++ +   l+ +d +g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   + +++ l+v
  678379155 109 AKTLTQSDANNGGGFSVPRYCAETIfppldygADPPVQ--NLIARDIHGDTWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--QAENGDLCV 204
                599***************************95444444..6999*********************************************..5599999** PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  678379155 205 GIRRA 209
                **997 PP
2Auxin_resp111.39.5e-37254336283
  Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a  a+++ +FevvY+Pra+t+eF+vk+++v++a+++++++GmRfkmafe+edss++++ +Gtv++v+ +dp rWp+S+Wr+L+
   678379155 254 AFLAANGHPFEVVYYPRAGTPEFCVKASSVREAMRIQWCPGMRFKMAFENEDSSRISWfMGTVAAVQFYDPQRWPGSPWRLLQ 336
                 567899***************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-36100212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-28105214IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.337108210IPR003340B3 DNA binding domain
SMARTSM010194.2E-19108210IPR003340B3 DNA binding domain
PfamPF023624.6E-20109209IPR003340B3 DNA binding domain
CDDcd100171.85E-20110208No hitNo description
PfamPF065071.1E-31254336IPR010525Auxin response factor
PROSITE profilePS5174518.598546625IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MVESDKSVDT ELWHACAGGT VEIPTVNTQV FYFPQGHAEH ALAPVDFGSL GRIPPLILCR  60
VAYVKYLADP ETDEVYAKTG LIPLKSNEFV GFDDENKMCE SSEKPMSLAK TLTQSDANNG  120
GGFSVPRYCA ETIFPPLDYG ADPPVQNLIA RDIHGDTWKF RHIYRGTPRR HLLTTGWSTF  180
VNHKKLVAGD SIVFLQAENG DLCVGIRRAK RECGTSTLWN YAAANYGDEN KLMQTSVCGG  240
GRTRVRPEAV VEAAFLAANG HPFEVVYYPR AGTPEFCVKA SSVREAMRIQ WCPGMRFKMA  300
FENEDSSRIS WFMGTVAAVQ FYDPQRWPGS PWRLLQVIWD EPDLLQNVKS VSPWLVEMVS  360
SIPLVSISPM SSPRKKLRFP HPMDLSVNGR FPIPSFLGNP LRPSSSLCCL RDNFTAGIQG  420
ARQYNLGLGV PFSDLRISNE MQMELLPSSF PRHDVVNIKT SCITDNDEDI SCLLSMGRNT  480
SESKSEKRDD GARTPSFILF GQRIHTEQQL SQDQQSSESF SPSLERTSSC GAPWKQDAAD  540
LASHPAGICK VYLGSEDIGR TLYLSDLGSY EDLYKRLEHM FEIERSEIIG SLLYDNATGA  600
SKQVVEEEPF SEFVRSAKRL IVQAKTGCSV KLGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-84836151392Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMap678379155
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089918.10.0auxin response factor 18-like
RefseqXP_020552218.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A191T8S30.0A0A191T8S3_SALMI; Auxin response factor
STRINGXP_010253698.10.0(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59224115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]