PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678379444
Organism
Utricularia gibba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family MYB
Protein Properties Length: 256aa    MW: 28895.7 Da    PI: 6.9213
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678379444genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l d ++++G+  +W + +++ g++R++k+c++rw++yl
        678379444 14 KGPWSAEEDAKLRDFIHKYGNVgNWIALPKKAGLKRCGKSCRLRWLNYL 62
                     79******************879************************97 PP
2Myb_DNA-binding40.75.3e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T eEd  +  + +  G++ W+ Ia+ ++ gRt++++k++w++
        678379444  69 GEFTDEEDSVICSLYTAIGSR-WSIIASQLP-GRTDNDIKNHWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.088962IPR017930Myb domain
SuperFamilySSF466897.03E-2711109IPR009057Homeodomain-like
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002493.6E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-241569IPR009057Homeodomain-like
CDDcd001672.17E-101662No hitNo description
PROSITE profilePS5129421.91763117IPR017930Myb domain
SMARTSM007178.2E-1167115IPR001005SANT/Myb domain
PfamPF002493.0E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2370117IPR009057Homeodomain-like
CDDcd001672.29E-770111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGRSPCCDKD NVRKGPWSAE EDAKLRDFIH KYGNVGNWIA LPKKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDEEDSVIC SLYTAIGSRW SIIASQLPGR TDNDIKNHWN TKLKKKLMKM  120
STLLLPLAPQ RYPEATFQCG ATIPLCNPLF FQHFQAPNPL PRTNTGSFLS LENLESGASL  180
PVSPYQHSYH PHGDLAGFQS ASSSYRLETN NDEMGLSNSL ILDQETPFFY DHQPIDLGES  240
CDFSFPTDDP GLWVLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap678379444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016749852.11e-72PREDICTED: transcription factor RAX2-like
RefseqXP_017645285.11e-72PREDICTED: transcription factor RAX2-like
TrEMBLA0A1U8PF683e-71A0A1U8PF68_GOSHI; transcription factor RAX2-like
STRINGGorai.009G110800.17e-72(Gossypium raimondii)
STRINGXP_009600706.19e-72(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-64myb domain protein 36